trit1 (trit1)


Basic Information

Item Value
gene id trit1
gene name trit1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23688512 ~ 23755557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249276.3
gagCATCCTGGAGCAGTGTGGACTGTCCGTCATGGCCGCCGCCAGTGTGGCTGTGCAGCGTGCGCTGGGGAAGCGCATCGTCCCTCCTCTGGTCGTGATTTTAGGCGCTACTGGAACTGGAAAATCGAAACTGGCCATTGAGCTCGGGAGGAGACTGCAGGGAGAGATAATCAGCGCCGATTCCATGCAGGTTTATAAAGGGCTGGACATCATCACCAACAAGGTGACACCAGAGGAGCAGGCGCAGTGTCCCCATCACATGATCAGCTTTGTGGACCCACTGGTGAGCAGCTACACAGTGGTGGACTTCAGGAACCGAGTTTTGTCTCTAATAGAGGACCTGCATCACCAGGAGAAACTGCCAGTTATTGTTGGAGGCACCAACTACTACATTGAATCTATTTTATGGAAAGTTCTTCTTGATACtaagCAGAAAAGTGGAACTGACATAAAGCGCAAGCTTGAGATAATGGGTGGTCCTGAACTTCACAAACGACTTAAGGAGGTGGACCCAGATATGGCGGCCATGTTGCATCCAAATGACACACGGAAAATTGCAAGGAGTCTTCAGGTGTACCAGGAGACAGGAATCCAGCACAGCCGTCTGCTGgaggagcagcagaagcaggaAGGGGGAGATGGTCTTGGAGGTCCTCTGCGTTTCACTGACCCCTGCATTTTCTGGCTTCATTCCAACATGGATGCTTTGGATAAAAGGCTGGACGAGCGTGTGGATGAGATGTTGTCTTCCGGACTGATAGAAGAACTGAAAGACTTTCACCAGCGCTTCAACGAGAAGAAAATCCAGGAGAACAGTCAGGACTACCAGCATGGCATCTTCCAGTCCATTGGGTTTAAAGAGTTCCACGAGTACCTGACTGCAGGAGCAGATGTCAGCCAGGAGGAACGAGAGGAGCTTAAAATGAAAAGTGTTGAGGCCTTGAAGCAGGCGACGCGTCGCTATGCCCGGAAACAGAACAAGTGGGTCCGCAACAGATTCCTCAAGAGACCTGGTACCTATGTCCCTCCTGTGTATGGCCTGGATGTGACAGATGTATCCTGCTGGGAGCAAACGGTCCTCCATCCTGCCCTCGACATACTGAACTGCTTACGGAAGGGAGAACAGCCGcccgttgagccaatcagagtgGAAGGGGAGGGGCCTCGGAATAAGCGGAGTCACCACGTGTGTGAACTGTGTGATAAAGTGATCATCGGTGACATGGAATGGACAGCTCATCTGAAGTCTAAAAACCACCAGCATCatgtgaggaagaggaggaatgCTGAAGAGAGCACGGAGCATCAGCAGGATGTAGAGTCCAATCTCGCCTCAGCACCAAAATATCCAAAACAGGCAAGTCCTACTACACTGGGTGTGGCCAGCTTGGAGCCGGGCACAGAAGGAACTGGGGATGATGAACAGAATGATCTTTGAGATGCATCCTGGTACTACTTttcctttttagttttttgtgcgATAAACTGGTGTGAGTAAAAACATACATGGACTACACTACACATGTGGGAAAAACAGCCTGagaaactctctctttctcttttattttcttgcctTGCTTTATTCCTGGACtattctcagtttttttttattgctggaTTACTACCTGGGATCTTCTGAACTTTGAAACTTTCTCCTtggatccttttttttttttttttttttttaacctggaATCTAAAACATTTCAGGACATTTCAAGAATATATGGAATAATTCAAGTGCAGCATCTTTTCCCCTTTGTGCCTTTTTTGATCTTCCAAAATTCAgccatatttttgttttttggcctcatatttttttaaagactgcCTTCAGATTGTGTAATATATAACAACATAACTGCTTGAATAATAAGCTCTAtaattaaagtgttttattttttataaa
>XM_022683196.1
ggagCATCCTGGAGCAGTGTGGACTGTCCGTCATGGCCGCCGCCAGTGTGGCTGTGCAGCGTGCGCTGGGGAAGCGCATCGTCCCTCCTCTGGTCGTGATTTTAGGCGCTACTGGAACTGGAAAATCGAAACTGGCCATTGAGCTCGGGAGGAGACTGCAGGGAGAGATAATCAGCGCCGATTCCATGCAGGTTTATAAAGGGCTGGACATCATCACCAACAAGGTGACACCAGAGGAGCAGGCGCAGTGTCCCCATCACATGATCAGCTTTGTGGACCCACTGGTGAGCAGCTACACAGTGGTGGACTTCAGGAACCGAGTTTTGTCTCTAATAGAGGACCTGCATCACCAGGAGAAACTGCCAGTTATTGTTGGAGGCACCAACTACTACATTGAATCTATTTTATGGAAAGTTCTTCTTGATACtaagAAAAGTGGAACTGACATAAAGCGCAAGCTTGAGATAATGGGTGGTCCTGAACTTCACAAACGACTTAAGGAGGTGGACCCAGATATGGCGGCCATGTTGCATCCAAATGACACACGGAAAATTGCAAGGAGTCTTCAGGTGTACCAGGAGACAGGAATCCAGCACAGCCGTCTGCTGgaggagcagcagaagcaggaAGGGGGAGATGGTCTTGGAGGTCCTCTGCGTTTCACTGACCCCTGCATTTTCTGGCTTCATTCCAACATGGATGCTTTGGATAAAAGGCTGGACGAGCGTGTGGATGAGATGTTGTCTTCCGGACTGATAGAAGAACTGAAAGACTTTCACCAGCGCTTCAACGAGAAGAAAATCCAGGAGAACAGTCAGGACTACCAGCATGGCATCTTCCAGTCCATTGGGTTTAAAGAGTTCCACGAGTACCTGACTGCAGGAGCAGATGTCAGCCAGGAGGAACGAGAGGAGCTTAAAATGAAAAGTGTTGAGGCCTTGAAGCAGGCGACGCGTCGCTATGCCCGGAAACAGAACAAGTGGGTCCGCAACAGATTCCTCAAGAGACCTGGTACCTATGTCCCTCCTGTGTATGGCCTGGATGTGACAGATGTATCCTGCTGGGAGCAAACGGTCCTCCATCCTGCCCTCGACATACTGAACTGCTTACGGAAGGGAGAACAGCCGcccgttgagccaatcagagtgGAAGGGGAGGGGCCTCGGAATAAGCGGAGTCACCACGTGTGTGAACTGTGTGATAAAGTGATCATCGGTGACATGGAATGGACAGCTCATCTGAAGTCTAAAAACCACCAGCATCatgtgaggaagaggaggaatgCTGAAGAGAGCACGGAGCATCAGCAGGATGTAGAGTCCAATCTCGCCTCAGCACCAAAATATCCAAAACAGGCAAGTCCTACTACACTGGGTGTGGCCAGCTTGGAGCCGGGCACAGAAGGAACTGGGGATGATGAACAGAATGATCTTTGAGATGCATCCTGGTACTACTTttcctttttagttttttgtgcgATAAACTGGTGTGAGTAAAAACATACATGGACTACACTACACATGTGGGAAAAACAGCCTGagaaactctctctttctcttttattttcttgcctTGCTTTATTCCTGGACtattctcagtttttttttattgctggaTTACTACCTGGGATCTTCTGAACTTTGAAACTTTCTCCTtggatccttttttttttttttttttttttaacctggaATCTAAAACATTTCAGGACATTTCAAGAATATATGGAATAATTCAAGTGCAGCATCTTTTCCCCTTTGTGCCTTTTTTGATCTTCCAAAATTCAgccatatttttgttttttggcctcatatttttttaaagactgcCTTCAGATTGTGTAATATATAACAACATAACTGCTTGAATAATAAGCTCTAtaattaaagtgttttattttttataaa

Function

symbol description
trit1 Predicted to enable tRNA dimethylallyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 35. Orthologous to human TRIT1 (tRNA isopentenyltransferase 1).

NR:

description
tRNA dimethylallyltransferase, mitochondrial

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00791 miaA, TRIT1; tRNA dimethylallyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249276.3 True 1909 mRNA 0.47 11 23688513 23755557
XM_022683196.1 False 1907 mRNA 0.47 11 23688512 23755557

Neighbor

gene id symbol gene type direction distance location
mycl mycl coding upstream 3447 23678958 ~ 23685065 (+)
kiaa1522 NA coding upstream 101593 23486649 ~ 23586919 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding upstream 211104 23471598 ~ 23477408 (+)
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding upstream 218981 23441994 ~ 23469531 (+)
LOC103041859 LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349 coding upstream 455509 23230207 ~ 23233003 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding downstream 143126 23898683 ~ 23932040 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding downstream 186997 23942554 ~ 23948993 (+)
LOC103034043 NA coding downstream 485807 24241364 ~ 24251389 (+)
csmd2 csmd2,LOC107698986 coding downstream 892476 24648033 ~ 25075791 (+)
trappc3 trappc3 coding downstream 1614944 25370501 ~ 25377202 (+)
G199417 NA non-coding upstream 47732 23640548 ~ 23640780 (+)
G199378 yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269 non-coding upstream 94931 23587762 ~ 23593581 (+)
G199362 NA non-coding upstream 262428 23425878 ~ 23426084 (+)
G199337 NA non-coding upstream 352015 23336261 ~ 23336497 (+)
G199333 NA non-coding upstream 404088 23284140 ~ 23284424 (+)
G199434 NA non-coding downstream 12649 23768206 ~ 23768432 (+)
G199436 NA non-coding downstream 13839 23769396 ~ 23770464 (+)
G199424 NA non-coding downstream 27374 23782931 ~ 23785959 (+)
G199469 NA non-coding downstream 365711 24121268 ~ 24173926 (+)
G199546 NA non-coding downstream 464804 24220361 ~ 24220614 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 819255 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1465476 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2305512 21358464 ~ 21383000 (+)
G198815 NA other upstream 2885622 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3413658 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1862371 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2830682 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 3076397 26831954 ~ 26892623 (+)
G200104 NA other downstream 3528663 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3548964 27304521 ~ 27305586 (+)

Expression


Co-expression Network