rbbp4 (rbbp4,LOC107584269,LOC107568807,LOC107709266)


Basic Information

Item Value
gene id rbbp4
gene name rbbp4,LOC107584269,LOC107568807,LOC107709266
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23471598 ~ 23477408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249285.3
CGCGGGGCCGCGCCGCTTTCTGCTGTAGAGTTTGGCGCGAACGTGCACGCCGGCGCGCGAGACAAAGAAGAGCGGCAGGATCACCCGCGGTCCCGAAACTTGCCCGGTTTGTGGCCGTTAACGACTCGCCATGGCTGATAAAGACGCTGCTTTTGACGATGCTGTTGAAGAGAGGGTGATAAATGAAGAGTACAAGATATGGAAGAAGAACACCCCATTTCTCTACGACCTGGTGATGACCCATGCCCTGGAGTGGCCGAGCCTCACTGCGCAGTGGCTGCCAGATGTCACAAGGCCTGAGGGTAAGGATTACAGTGTTCACCGTCTGGTTCTCGGCACCCACACCTCTGATGAGCAAAACCACTTGGTCATTGCCAGTGTTCAGCTACCTAACGACGATGCCCAATTTGATGCCTCACATTACGACAGTGAGAAAGGAGAGTTTGGAGGCTTTGGCTCAGTGAGTGGTAAGATCGAGATTGAGATCAAGATTAACCATGAAGGAGAGGTGAACAGGGCGCGATACATGCCACAGAACCCCTGCATCATTGCTACCAAGACTCCCACCAGTGATGTGCTGGTCTTTGACTACACCAAGCATCCGTCCAAGCCTGACCCCTCTGGCGAGTGTACTCCTGACTTGCGATTGAGGGGGCATCAGAAAGAGGGATACGGCCTGTCTTGGAATCCCAACTTAAGTGGCTGCTTGCTGAGTGCATCTGATGACCATACAATCTGTCTTTGGGATATCAGTACGGTGCCAAAAGAGGGAAAGATTGTTGATGCTAAGACCATTTTCACTGGTCACACTGCTGTGGTGGAGGATGTTTCATGGCATCTCCTTCATGAATCTCTTTTTGGATCCGTGGCTGATGACCAGAAGCTTATGATTTGGGATACCCGTTCCAACAACACATCCAAGCCCAGCCATGCAGTTGATGCCCATACTGCAGAGGTCAATTGCCTGTCCTTTAATCCCTATAGTGAGTTCATCTTGGCCACAGGTTCAGCTGACAAGACTGTAGCACTCTGGGATCTTAGGAACCTTAAGCTGAAGCTACACTCCTTCGAGTCACACAAAGACGAAATCTTCCAGGTTCAGTGGTCACCTCATAATGAGACCATCTTGGCATCCAGTGGAACAGACAGACGGCTCAATGTCTGGGATCTCAGtaaaattGGTGAGGAACAGTCACCTGAAGATGCAGAGGATGGTCCTCCTGAATTACTGTTCATCCATGGTGGTCACACAGCAAAAATCTCAGACTTCTCCTGGAACCCCAATGAGCCGTGGGTGATCTGCTCTGTATCCGAGGACAACATCATGCAAGTGTGGCAGATGGCGGAGAACATTTACAATGATGAGGaccctgaaggagctgcagacaCAGAGGTCCAGGGATAAAGAACAATAGAACTTTGACTCTCCTCCCCACCTCGCTGTCTCTATACAACCATGACCATGTTCTTTCCCATCTCCTGGAACTGTGAACTGTCAGCCACATCAGCAGCCACCTACACAAACATGTGAAGAACATAATGTTCTTTCCCAAGAAAAGGAGGGGGACATTGACTGGCAACCTTTTTATTACTTTGtgaaaagtgtatttttctATGAGAAATTGGTGACTCTTTGGtttaaaagtataaattatctctcctttttttttaaaatgtgtttatactAAGAGCTCTACACATCCTATGAGTTTTCTGAGAGTaggttttcattttaatgtttcaaAAGCAACTTTTGGCTGACTACCAGCttgatgtggtctcttattatggTGGCTGTCAATGGAGAACAtggtaattatttttattcttacttGTCTTCAACAAATGCGTCATTCATGTCGGGGGTCCACAGGGTAACCTGTGCACTCCTTTATTTTGTACTTACTTCTGAGTAATGGTCTGTGATGTTCTctgttttatgtctttaatattgtaaaatcCTTTTGTGGCTTTTCATCGTCTTTCTCCCCGTTATGTCTGTGTTATTGTACAGAACATTcagaataaactgttttttcacTGAA

Function

symbol description
rbbp4 Predicted to contribute to ATPase, acting on DNA. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Predicted to be part of CAF-1 complex and ESC/E(Z) complex. Is expressed in gonad; muscle; nervous system; and pectoral fin. Orthologous to human RBBP4 (RB binding protein 4, chromatin remodeling factor).

NR:

description
PREDICTED: histone-binding protein RBBP4

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0035098 ESC/E(Z) complex cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249285.3 True 2045 mRNA 0.47 12 23471598 23477408

Neighbor

gene id symbol gene type direction distance location
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding upstream 2067 23441994 ~ 23469531 (+)
LOC103041859 LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349 coding upstream 238595 23230207 ~ 23233003 (+)
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 244527 23202682 ~ 23227071 (+)
LOC103043314 t106b,LOC103043314,LOC108425340,LOC107696205,LOC107709260,LOC107584266,LOC107702131,LOC107555560,LOC107724356 coding upstream 275534 23183923 ~ 23196064 (+)
c23h6orf62 cunh6orf62,c24h6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107743835,LOC107702127 coding upstream 294860 23171731 ~ 23176738 (+)
kiaa1522 NA coding downstream 9241 23486649 ~ 23586919 (+)
mycl mycl coding downstream 201550 23678958 ~ 23685065 (+)
trit1 trit1 coding downstream 211104 23688512 ~ 23755557 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding downstream 421275 23898683 ~ 23932040 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding downstream 465146 23942554 ~ 23948993 (+)
G199362 NA non-coding upstream 45514 23425878 ~ 23426084 (+)
G199337 NA non-coding upstream 135101 23336261 ~ 23336497 (+)
G199333 NA non-coding upstream 187174 23284140 ~ 23284424 (+)
G199266 gmnn,LOC107696207 non-coding upstream 302005 23165496 ~ 23169593 (+)
G199250 NA non-coding upstream 470113 22936494 ~ 23001485 (+)
G199378 yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269 non-coding downstream 110354 23587762 ~ 23593581 (+)
G199417 NA non-coding downstream 163140 23640548 ~ 23640780 (+)
G199426 NA non-coding downstream 214090 23691498 ~ 23693813 (+)
G199434 NA non-coding downstream 290798 23768206 ~ 23768432 (+)
G199436 NA non-coding downstream 291988 23769396 ~ 23770464 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 602341 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1248562 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2088598 21358464 ~ 21383000 (+)
G198815 NA other upstream 2668708 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3196744 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 2140520 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 3108831 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 3354546 26831954 ~ 26892623 (+)
G200104 NA other downstream 3806812 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3827113 27304521 ~ 27305586 (+)

Expression


Co-expression Network