LOC103041859 (LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349)


Basic Information

Item Value
gene id LOC103041859
gene name LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23230207 ~ 23233003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249292.3
CAGAGCCTGTCGGTCGTCGGTTGGACCAGCGGTGTTGTAATGAGCAGCAAGCCGCTCTGCTGTATCAGTCAGCCGGGGAGGCGGAGAGCAGCGCACTGTGGTCACCTCACACAGTCTGGAGGAGAAAACAGCGGTCTGAGAGCTCGTAGCTTCGTGTTTGTTGTGTTATTTTACCCGGAGGAGAGTGTATAATCGTGTGAGGTTCTACTGGTGGCCTCTCAGCAAGAGGGAATGAGAGAAGCCTTGTGAATATTTggtgaagcagcagcagcagtggcgcCTGGTCTCCTGAGCCTTCCCCTCTGCTTTCATCCCATCCAGCGTGGCAGAACGAGATGGGGAACGGATTATCAGAGCCCCACGCCATCTTCCCCTGTTTGCCGTCGTTCCAGGCCCTGCACATTGTTATTCTAGGGCTGGACTGTGCTGGCAAGACCACGGTGTTGTACAGACTGCGCTTCAATGAGTTCGTCAACACTGTCCCGACCAAGGGCTTCAACACAGAGAAGATCAAAGTGGCCCTAGGTGGGAAGGGCCGGACAGCAGCCTTCCACTTCTGGGATGTTGGGGGCCAAGAAAAGCTACGGCCGCTGTGGCGCTCCTATACGCGCTGTGCCGACGGACTGGTGTTTGTAGTGGACTCCGTGGACGCCGAGCGCATGGAGGAGGCCAAAACAGAGCTGCACAAGATCACGCGACTTCAGGAGAACCAGGGTGTGCCCGTGCTGGTGGTGGCCAACAAGCAAGACCTTCGCAGCGCTCTGCCACTTGGTGAGGTGGAGAGGCTGCTGGCACTGAATGAGCTAAGTATCCACACACCCTGGCATCTCCAGCCTGCATGTGCCATTATTGGGGAGGGCCTGCAGGAGGGCCTGGAGCGCCTTCACGGCATGATCGTCAAGCGGCGGAAGATGATGAGGCAGCAAAAAAGGAAGAGATAACTGTTGGAAgggcagcgtgtgtgtgtgagaaagagagaggggcgGCTAGCAGGGTTCACTCACGCCTCTGGGCTGTGTCTGCTGATGACACAGGCCGCTAGGCCCGCGTGACTGTGCACTGGTGGATTGATCGATTTATGCAGGCTGAGTTTTATCAGTCTGATGGAGCTGGATGAACACAGTTCAAAGATGTTGGACATCATGTTCATCTCCAAGCGGACACTATCGATTTGCCACTCTGGTTATGGAGGGTAAAAGTCCCGGGACAGTGCAGATGATGTCATGGGGTATAAATACGTAAAGGAAAACAATGTTACGCTACTTCAGTGGACTTATTGTTCATTGATTTGTGATGAAGGTAAACACTGGACATAAACTCAACCCACCCCTCCAGGGTTAAACATTTTCTATTATCTGTTCTTACACAATGTGAACTAATGAACTGAAAGGATGGATTACCAAAGCCCTGTATGCTTCTATAAGTGTTCTAAAATGTACACGTTCAGGTGGTCTGTCACccctgttgttgttattattattattattattattattattattatgaaaatgGGCCTTTTCCCCTGAGTCTTTATATAGTACCATTATTGCACAACAGAGGTGTGGTTGAAGGGGAACCAATATAAGCTTTATGAATCACTATTTGGGAACACATGGATGTTTTGAGGTTTTAGAATGGGGTGTGTCACCAGCCTAACACCTAAAGTTCTGCACAGGCCAGTAAATATGCCACCGAGGgcaggtaaagaaaaaaacgagCACATGTTGGTTGAAGTGTCTAATGTGGCTAATGACTCAGCTCAGCAAGACGTCTCCCGTGATCCTGGAGTTTCTCTCTCCTAAAACAAATGGGTGTCATTTGTGGTCCTATACACAATGTGTGCTTCCCTGTACATTATGCACTTTAGCAACCCCCCTTTTGTAGTCTATGAACttgtatcagatttttttctatgGAACTTatgaaagtaaagaaaagatGTGACGTATTGCTTCGAAGGAAGCGTTTTATAAGTCCTATGTTGTTCCACATTCAAGTGTGTCATTTTGTCACTCGGTATGTATGTGATGGAGGGATGTTCATATTTATGTGTCAAAATTTATACAccttgaataaaacaacagctaCACTGAAGAAAA

Function

NR:

description
ADP-ribosylation factor-like protein 4A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249292.3 True 2099 mRNA 0.49 2 23230207 23233003

Neighbor

gene id symbol gene type direction distance location
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 3136 23202682 ~ 23227071 (+)
LOC103043314 t106b,LOC103043314,LOC108425340,LOC107696205,LOC107709260,LOC107584266,LOC107702131,LOC107555560,LOC107724356 coding upstream 34143 23183923 ~ 23196064 (+)
c23h6orf62 cunh6orf62,c24h6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107743835,LOC107702127 coding upstream 53469 23171731 ~ 23176738 (+)
ripor2 fam65b,LOC107555568 coding upstream 68988 23055198 ~ 23161219 (+)
LOC103044827 si:dkeyp-120h9.1,LOC108257412,LOC107584261,LOC106570559,LOC107702119 coding upstream 177178 23033655 ~ 23053029 (+)
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding downstream 208991 23441994 ~ 23469531 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding downstream 238595 23471598 ~ 23477408 (+)
kiaa1522 NA coding downstream 253646 23486649 ~ 23586919 (+)
mycl mycl coding downstream 445955 23678958 ~ 23685065 (+)
trit1 trit1 coding downstream 455509 23688512 ~ 23755557 (+)
G199266 gmnn,LOC107696207 non-coding upstream 60614 23165496 ~ 23169593 (+)
G199250 NA non-coding upstream 228722 22936494 ~ 23001485 (+)
G199244 NA non-coding upstream 293942 22935761 ~ 22936265 (+)
G199243 NA non-coding upstream 344970 22880651 ~ 22885237 (+)
G199240 NA non-coding upstream 351851 22871075 ~ 22878356 (+)
G199333 NA non-coding downstream 51137 23284140 ~ 23284424 (+)
G199337 NA non-coding downstream 103258 23336261 ~ 23336497 (+)
G199362 NA non-coding downstream 192875 23425878 ~ 23426084 (+)
G199378 yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269 non-coding downstream 354759 23587762 ~ 23593581 (+)
G199417 NA non-coding downstream 407545 23640548 ~ 23640780 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 360950 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1007171 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 1847207 21358464 ~ 21383000 (+)
G198815 NA other upstream 2427317 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 2955353 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 2384925 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 3353236 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 3598951 26831954 ~ 26892623 (+)
G200104 NA other downstream 4051217 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 4071518 27304521 ~ 27305586 (+)

Expression


Co-expression Network