LOC103026526 (nt5c1aa,5nt1a,LOC108425118,LOC107653825,LOC107702103,LOC107710055,LOC107724290)


Basic Information

Item Value
gene id LOC103026526
gene name nt5c1aa,5nt1a,LOC108425118,LOC107653825,LOC107702103,LOC107710055,LOC107724290
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22227122 ~ 22252040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249331.3
GATATCAAACCAGAGCACAAGAAGCAGATTGCGGGCACCGCGTCAGAGACGAGAGGACACACAACATTACACGGCTCATAATTCCCCAGCCAGAGCAACCAGAGCAGCAGCAccaccaacagcagcagcagcaaatcCTGCACCTCCAATAAACCCTACACAACCCAGGAGCAGAGACCTAAAAGAACATCAGCAGCATTAACAGACCTTTACAACATGGGGGTCATATAGAGGGcaactgtctgtatgtgtgtggatgtgcagaagtgagtgtgtatgtttgtgagcAGAGTTTGAGTGTGAGTGAGGAACCCTCAGAACAGCAGTTAATGAGTGGAGTCCAGAAGAATGAGTCTTGACCCCGTGCAGGTCATGAAGGGCCAGGACCCCATGGCCCTTAGCCCTCCGCCAGCTTCTAATGGAGACAGCAAAGTGTCCTGGGATGAAAAAGAGGGCTTCTGTGACAGTGTGGGTCCCAAAAAGCCCAAATCAGGACCAGTGAGACGGGCCCGGAAGGTGGAGGGAGGCATTTTCTTTCCCAAGCCAGAGAATGCAGTGACAATAGCGGTGTCATCTCGGGTGCTGTTCCGTACAGAGAAAGAGCAGAAGGTGTTTGAGGAGAAAGGAGTGGAGGAGTATCTCAAATACCAGGTGGAACATGAGAATGAACCTTTTGCTCCTGGACCAGCGTTTCCATTTATTAAGGCCCTGGAGTCAGTTAACACGAGATTACGGGAACTGTATCCAGAGAGCGAGGAGCTTTTTGATATTGTTCTGGTGACCTACAACCACGCAAACGTAGGAGTGAGGCTTATCAACACCATCAACCACCACAATTTGTTTATTGAGCGGTTCTGCATGACAGGAGGAAGCAGCCCCATTGGCTACCTGAAAGCGTGGCACACTAACCTGTACCTGTCAGCTGATGCAGAGAAGGTCCAGGAGGCACTGTCTGAAGGCATTGCAGCAGCAACCATGTTCATGCCAGAGAAGCAGATAGAGGTGTCAGAGACCCAGCTGAGAGTGGCCTTTGATGGAGATGCAGTTCTGTTTTCTGACGAGTCAGAACGCATATTTAAAGCTCATGGTCTGGACAAGTTTTTTGAGcatgaaagagaaaatgagaacacACTGCTGGATCATGGTCCTCTGAAGGGTTTTCTTGAGACTCTTGGAAAGCTCCAGAAGAAGTTCTATGCTAAAGGCCACAGGTTGGACTGCCCCATTCGCACCTACTTAGTAACGGCCCGCAGTGCAGCCAGCTCGGGTATCCGTGCCCTAAAGACTCTCCGTGCCTGGGGACTGGAGACAGATGAAGCCCTGTTTCTGGCCGGGGCTCCTAAAGGCCCCATGTTGGAGAAAATACGACCCCACATTTACTTTGACGATCAGATGTTCCATGTAGAAGGAGCTGTGGAGATGGGCACCATTGCTGCACACGTGCCCTACGGCATAGCACAGAAATACCCtcataaaaaaaagagcacCAACTCTGCCAAGTAGCAGAGACACAACAGACCCCAAGCGGATGGGACATATGCAAATGAAAATCATATGTCCTGTGCTAAATGCCTGAGTGGGCTTAGAAGAAAGACTCGGGTTGTGGAAATACATATATCTTGACATGATGTCGACAAGATGCCATAAATGCTTTGgtttaaatgaactgaactgaactgacagACTTTCATTTATACATGAATTTGACCCAACACTGGCTGATACCATTAATCCCTGTATCTCTTCTGTCTTCACTGTGTTATTCAGCCTTATTCTGCTCATCTTTGTATGTCAATACCAGCTTGTGCTGAGATACACAATATTGCCATCATCCTCATTGTCCTCAGTGTCTTCAACTACAGTATGAAACACATGAAgtgaactgtgtgtataaaggaAAATTGTAAATTCATGTATAAAGTGAATTATTTTGCTCTATGTAAGAGAAATTACTGTAACATTGTTTGTTTATAGTGTGATATGATGTGGTCTGTCTTGTATATTCATATGGTGCTTAAAAAAAGCAACTATGATACTACAATATATAAGCGACAGACTCATCAGAGCTCATTGTACAAGATAATAAAAGCCATAAACACGAGCCCAAAA

Function

symbol description
nt5c1aa Predicted to enable 5'-nucleotidase activity. Predicted to be involved in adenosine metabolic process. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human NT5C1A (5'-nucleotidase, cytosolic IA).

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 1A-like isoform X1

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249331.3 True 2109 mRNA 0.46 7 22227122 22252040

Neighbor

gene id symbol gene type direction distance location
LOC103028033 NA coding upstream 18084 22201552 ~ 22209038 (+)
LOC103028646 laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding upstream 35970 22176880 ~ 22191152 (+)
mtdh NA coding upstream 57264 22160809 ~ 22169858 (+)
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding upstream 67698 22150369 ~ 22159424 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding upstream 78760 22141456 ~ 22148362 (+)
LOC103025175 hpca,LOC108425130,LOC105005722 coding downstream 60215 22312255 ~ 22372349 (+)
LOC103026000 zgc:91944,LOC103026000,LOC108425172,LOC107710043,LOC108257190,LOC107556377,LOC107724285,LOC107702106,LOC107696225 coding downstream 142569 22394609 ~ 22407693 (+)
zbtb8b zbtb8b coding downstream 186673 22438713 ~ 22445155 (+)
fuca1 fuca1 coding downstream 196706 22448746 ~ 22458878 (+)
LOC103024228 gmpr,LOC103024228,LOC108425204,LOC107584250,LOC107702110,LOC107696222,LOC108257268 coding downstream 207206 22459246 ~ 22474209 (+)
G199090 NA non-coding upstream 8735 22215879 ~ 22218387 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding upstream 26411 22196666 ~ 22200711 (+)
G199006 NA non-coding upstream 235495 21991532 ~ 21991627 (+)
G198968 NA non-coding upstream 385294 21820975 ~ 21841828 (+)
G198965 NA non-coding upstream 421383 21805474 ~ 21805739 (+)
G199097 NA non-coding downstream 9074 22261114 ~ 22261775 (+)
G199103 NA non-coding downstream 47854 22299894 ~ 22300471 (+)
G199137 LOC103026708,LOC108424525,LOC108257191 non-coding downstream 139326 22391366 ~ 22392565 (+)
LOC111195530 NA non-coding downstream 162207 22414247 ~ 22422376 (+)
G199145 NA non-coding downstream 225508 22477548 ~ 22485763 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4086 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 844122 21358464 ~ 21383000 (+)
G198815 NA other upstream 1424232 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1952268 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 2138135 20053028 ~ 20088987 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 578191 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3365888 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4334199 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 4579914 26831954 ~ 26892623 (+)
G200104 NA other downstream 5032180 27284220 ~ 27284567 (+)

Expression


Co-expression Network