LOC103030765 (klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674)


Basic Information

Item Value
gene id LOC103030765
gene name klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22035185 ~ 22042547 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249346.3
TGGTGCCTGGCTAAGCGATGTGGGAACAAACAAGGGGAGGGTCAAAGGCAGGAACGTTCACAGCCTCCAGAACTATTCTCGGAAACTGGAATGTACACAGCGTGCTCATGGCGAGCTTCTAGATACTTCAATGAACCCTTCTCTACGCCGCCCACGTCTGACGGCTATTTCCTTTACTTCTTGAGGGCCACACCTGAGGGGAATGTTTTTGGCCTTAATGCTGCTGAACCGGGACTGATTCTGTCCAGACAGAGTGGAATGTGAAAGTTAGGAACAGTCTAAAGTTGAGAATGGCCTGTTCATCACTTGAGGTATTCTCATTCAAGGACCAGGAGCTTCCAGCCCACCTGCTCTGCCAGCTGAACATCCTCAGGCTGGAGCGCATCTTCACCGACGTGCTCCTGTGCACAGAGGACAAGGAGATTCCCTGCCACAGGAACGTCCTGGTCTCCAGCAGCCCTTACTTCCGCGCCATGTTCTGCAGCAACTTCCGTGAGAGCAGCCAGGCCCGGGTGGACCTGAAGGGCATTAGCTCTGAGGTGCTGGCGGGGATTGTGGACTACATCTACACAGGCAGCATCACCATAACGATGGAGCTGGTGCTGCCACTGATGCAGGCTGCGTCCATGCTGCAGTACGTCAGGCTCTTCGAGGCCTGCTCAACCTTCCTGCAGGAGCAGCTGAACCCAGACAACTGTCTGAGCATGATCCGGCTGTCGGAGATCCTGCACTGCGACAGCCTGAGAGACAGGGCCAAGGAGATGGCCGTGCGCTGCTTTTCTGATGTTGCTGCCTCTGAGGACTTCTGCGAACTCTCCCTGCCTGAGCTCATGTGCTATTTGGAAGATGACCGTCTTTGCGCTGAGGAAGAGCAAGTGTTTGAGACTCTTCTGGCCTGGATCCACCATGACCCCTTTTCACGGCGAGGTGCCATCCATGACCTCTTCAAGAAGGTGCGCTTACGTTACATCCACCCAACGTACCTCTTCCAGTTCATAGCCAACGATCCTCTAGTCCAGTCGTCTACGCTCTGCACTGAGATCATTGAGTCTGTGCGGCGTCTGATGTTTTCGGTTAGCGCCAAATGCACCCGCGAGCTGAAGCCCCTGTGGACCACGCCTCGCCGCTACACCTGCCGAGAGACTTTAGTTGTGGTCGGAGGCCGTAAGAACAATGAGCAGACGTCCAGAGAGGCACTGCTCTATGATGAACGCACCCAACGCTGGCAATGGTTGGCCAAGCTGCCTCTACGCCTGTACAAGGCTGCTTACGTCTGCATTCACAGCATCCTGTACGTGGTTGGAGGCCTCAGCCTGAGCTTAGCCTCTGGAGACAGTGCAGTTAGCGCAACTGTCTACACTCTTTCGTTGAAGACCAACCAGTGGAGAACAGCCGAACCCATGCTGGAACCACGCTACGCCCATCAGAGCGTGTCCTACCTGCACTTCATCTTTGCTCTAGGAGGTATTGGGGCTGACAAACAGATATCGAACACAGTGGAGCGCTACAACAGCATGTTCAACCAGTGGGAGGCCATGGCTCCCATGCCTACAGCGGTCCTACACCCCGCAGTGGCTGCCAATGACCAGAGGATCTACGTGTTTGGAGGGGAGGACTCCATGCAGAATCCAGTGAGATTAATACAGGTTTATCACATATCACGGAACATGTGGTCCAGACTGGAGACCAGGACAGTGAAAAATGTCtgtgctcctgctgctgttataGAAGACAAGATTTACATAATTGGAGGTTATACAAGAAGAGTGATCGCCTACGACACCAAAGCCAACAAGTTTGTCAAATGTGAGAACATGAAGGAGAGGAGGATGCACCACTCAGCTACCGTCATCAACAACAAGGTCTACGTAACCGGAGGACGCTTCCTCAACAGCCACGATGTCATAGAAGACTCTGACTGCTTCGAGTGTTACGACCCTAAAGCAGACGCGTGGTCGTCTAAGGGTTCTTTACCCTACAAGCTGTTTGATCACGGCTCACTGCCCCTTATCTGTGTGTCTAACCGACCCAACCCTCCCTGAAGGATGAGAGGAGGACCGGTTAAAATTCCCAACACCTAAAAATTCAAAGAAGCTGCCGCAGCTGAGACTGGAAAACCATCTGAGGAAGCTCGCATCCCCCTTCCAGACCGAGCCTCATCTTGCCTGTGGCTTTGATGGTATGCTGCTGCAGATCCCAGCATCTGCAGGGTCTTAAATCAAAGGAGATTTGAGCTGATGAGTGGCTGTGTCACTGTGACTGTCCCGGGAGTGCGCTCAGGAGCACACACTTGCGCAACGCACACCTGTCCCTGCACAACTGTGACCCAAAATCTTCACAGGCCAACGTGTCACATTCGAGTTCCTTCCATCACCTTCTTTTCCTCTCAGAGGGGCTTCCGTTATCGTGAACTGTAGCAgaagggtgggtgatatggcaaggaatttaatatcatgatactttttatgactattttacttttttgaggTTTAAACTGACACACTGTATCACCCAATGAATAGCGATATGTTTTTAAAGACTAAGAAAACCTTTATTCATCATTTgtgaatatttattaattataaactCAGCTATGTTGCAGTTCTTTGTTTGGTGGCTGCAGTTGTTATACAttctttgtagttttttttacagactcTATAATTGgtttatatatttgattttatgACATATGGACTTGCAACTTGTttgatacaaaagaaaaaaaatcacattgttcTTATTTTCATTTCCGTGACATATCTACAAGAAATACATTATATCTGCCCATTTTTAACAGTTTCTTTTTATATGAAATTATTATTCCCATGATAGATTAAGTTATTGATTTCTGGTGACTTCAGGtgaatatttctgtatttttaaatatataaatgtacagctctggaaaaattgaagacaccacttcagtttcttaatcagttcATCTGGTTTTGGTATTTATAGgcatatgtttgtgtaaaatgaatattgttgttttattctataaacttcagacaccatttctcctaaattccaaat

Function

symbol description
klhl38a Orthologous to human KLHL38 (kelch like family member 38).

NR:

description
kelch-like protein 38

GO: NA

KEGG:

id description
K13959 KLHL38; kelch-like protein 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249346.3 True 3042 mRNA 0.48 4 22035185 22042547

Neighbor

gene id symbol gene type direction distance location
LOC103033932 LOC108424940 coding upstream 90931 21931796 ~ 21944254 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding upstream 162733 21860578 ~ 21872452 (+)
lrrc69 NA coding upstream 628996 21401489 ~ 21406189 (+)
otud6b otud6b,LOC107556329 coding upstream 639657 21390138 ~ 21395528 (+)
LOC107197622 LOC107197622 coding upstream 678850 21351562 ~ 21356335 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 98909 22141456 ~ 22148362 (+)
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding downstream 107822 22150369 ~ 22159424 (+)
mtdh NA coding downstream 118262 22160809 ~ 22169858 (+)
LOC103028646 laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding downstream 134333 22176880 ~ 22191152 (+)
LOC103028033 NA coding downstream 159005 22201552 ~ 22209038 (+)
G199006 NA non-coding upstream 43558 21991532 ~ 21991627 (+)
G198968 NA non-coding upstream 193357 21820975 ~ 21841828 (+)
G198965 NA non-coding upstream 229446 21805474 ~ 21805739 (+)
G198947 NA non-coding upstream 378421 21656416 ~ 21656764 (+)
G198943 NA non-coding upstream 415340 21619638 ~ 21619845 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding downstream 154119 22196666 ~ 22200711 (+)
G199090 NA non-coding downstream 173332 22215879 ~ 22218387 (+)
G199097 NA non-coding downstream 218567 22261114 ~ 22261775 (+)
G199103 NA non-coding downstream 257347 22299894 ~ 22300471 (+)
G199137 LOC103026708,LOC108424525,LOC108257191 non-coding downstream 348819 22391366 ~ 22392565 (+)
LOC103037930 NA other upstream 652185 21358464 ~ 21383000 (+)
G198815 NA other upstream 1232295 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1760331 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1946198 20053028 ~ 20088987 (+)
G198540 NA other upstream 2787789 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 176718 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 787684 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3575381 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4543692 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 4789407 26831954 ~ 26892623 (+)

Expression


Co-expression Network