LOC103033932 (LOC108424940)


Basic Information

Item Value
gene id LOC103033932
gene name LOC108424940
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21931796 ~ 21944254 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249359.3
GCGGGCGGAGTTCCAGCTGTCGTCGTGTGCGAGAGCTTCAACATCACACGGGCTTTTTAACGGAGCGGCTGCGGAGACCGGGGGTTTCTGGAGGTCgtctctgtttgtgttttgtttcctGGGATCAGCTGTCCGTCCACACACTCCAGACTCGGCCTGAGTGATGGACTGAACCCGCTGAAGCGGCTAAAAACAGCTTTGTTTTGCGACTCGACtccacttttttttgtctttcagcGAGAAAAGTtagtttagctagttaacctCTATTCTGCAGGAATATATGACTGTCTGAAGTCGTGAATGTGACACCACGGAATACCCCCCTTTTCCAAGGACTGACACCCACCCCCTTTTACCCCTCTTTCACCCGCTCTTTTACCCCCTCGGCTCCACCATGGTCGTGCACGGCTGCAGcggcaccaccaccaccagcagcccGGCGCCCACCTGCGCCCGGCCGGGCAGACGCGCTCACAAGCGCCTGGACAGCGACGAGCCAGTGGCTAAGTGCCCCAGGCTGAAGCTGAACGAGGCGGCTGCGGGCGACCCCGCTGCCCTCGTGCCCTCTCCGGGATGTCCTCCGAGCGGAGCCTCCCCGGGGTCACCCCCGGTCCCCCAGGGTCCGTCTCGAATCGGCCGCTTCCTGCTGCTGCCCCTGGCCGAGCGGGCAGGGCTCCACAGCGCGCTGGATACAGTGACCGGAGAGGAGCTGCTGTGCAAGGTGTTTAATATGGGACAGTACCAAGAGAAGATCAGGGCCTACAGCATGCTGCCAAGGCACAGGAACATCGCCCAAATCAAAGACATTGTCCTCGGGGAGCGGAAGGCTTATGTATTTCTGGAGAAGGACTATGGTGACATGCACACCTTTTTGAAGAGCTGCAAGCGGGTGCCTGAGGAACAGGCTGCCAAGCTCTTCTATCAGGTGGCCTCGGCTGTCTCCCACTGCCATCAGGCTGGCATAGTGCTGGGGGACCTCAAGCTCCGCAAGTTCGTGTTCTCAGATGAAAAAAGgactcatttgaagctgGAGGGTCTGGAGGACTGTCATATCCTGAGCGATGAGGACGACTCAGTGTCAGACACACATGGCTGCCCGGCGTACGTCAGTCCGGAGATCCTGAGTGGTGGAGGGAGTTACTCAGGGAAGCAGGCAGATGCCTGGAGCTTGGGGGTCATGCTGTACACCATGGTCGTGGGCCGCTACCCCTTCCATGACCCGGACCCTGCCACTCTGTTCTCTAAAATCCGGAGGGGTGTGTTCTGCCTACCAGAGGGCCTGTCACTCCGAGCCCGCTGCCTCATACGTAGCCTTCTCCGGAGAGAGCCCTCAGAGAGACTGACTGCCGCTGAGGTGCTCATCCACCCGTGGTTCCAGAGCAGCATGCGGGACACTGAAGGCCCAGAGCAGGACGTGAGCTCTGCGGAGCAGACAGTACCTCAGGTCAAAGTAGAGCTGGATGACCAACTCTTCTGCTGATTAAAACCCCCACAAGCTCACATTCGGACCAAAACTGTTTAATGTGCCCTTCGCTGGTTCTTTTCTTTCACAGTGGGCGTAGGCATGCAGTAGGGGTGTAAATCTCAATTGCAGCTATTTAGTAAACAATTCACTGCATCATGATAAGctaaagagacaaaaaatatttaaagatatttaattCAGCCAAGACATAAGCACATAATTTATTGAATACTATGTTAGACTTGATTATAAAGGCCATAGCATcgcatagcatagcataacaAATATTCCATAACAAATATTCTAATGTTTGCAGCTGGCTTTATACTATTCCAGAATAGAACTGACAAATCAAATCAATCAGTGTGAATGGAAGAGAACATTGGAGGACAGTATTGATAGTGATGTCAGATTACTGCAGAACAGTAAATGGGAGaatgttctagaacagtgtgaatggagGAAGCAtcctagaacagtgtgaatcgGGGGATGCATcatagaacagtgtgaatggggGAAGTGTTCCAGAAAAGTGTGAATGATAGAACTCTAGAATAGTGTTGGAGGGCATTCTGGAACACTTTGAATGGGAGGAGCTTTTTAGAACACTCGAAATATGGGAAGAATATTCTAGATCAATGTGAATCGGGGGAGCATTCTAGAACAACCAATGGGGGGGGACACTATAGGACTGTCTAAACAAAGAAGGGCATTCAAGAACATTGTAGAACATTGTAATAGACAGAAAAATCTCTACAACAGTgcaaattagggagaaaaaaattaaaggagagCATTCTAGAATAGTGTTAATGAAGAACTGTGTGAATAAAGAAAGGACACTTGAATTCACTGAATTTGgggaacattctagaacagtgtaacaTAGGGAGCAAATTCTACAACAGTTTGAATGAAGGTCAGCATAGAAACAGAAAAACTGTagaacagtgtgtgtggagagtaTAATACAGTGTGAATTTGGggaccattaaaaaaaactgtgtgaatTAAGCTGGGCATTTTTAAactaatgtttataaaaaaacgtTATAAATGTTCTACAGCCTCACATCACTCACATTTAGGGATGTAGCGTGAGAGTAATACATTCCAATTCGATGCAGTTGAATTGTCACCTTCCGATGCAAGTTTACACCCCTAGCATGCACTTGTTCACACCCTCAAAAGTACTGTGTGGTCTGTATTGGGTTAAGAGCCATGGCGCTCAGTGGCCGGCTTGTACTGAAGTCAATTTGGTGCTAATGACCTGTTTTCTCATGCTGTATGAAGTAAACACTGAAGCAGGGTACACAGGGATGAGAAAGCAAGGCAGTCTTCAAGATGACAAAGCCTCAGCCAAGTCCTGAGGACTCCAAACACATTAGCTAAAGAGGGGGGAAGGGACAAGGCGCTGAACTCTAGCTCTGCTCACACTCTCCAAACCAGAGGCAcccactgactcactcactcactgactgactgcaaCAGCACCAGAGGGGCATGTCTCATTTTAAAGAGGTTGATGGACTCAGAAATGTACACATTTACACGCAGCATTTACACTGATCTAAATCGGGGTGACTGTATGGCCTCGTAACTCTCCATAAGGTGCCAAACAGTACTGGGGAGATGATAATATGTGGCCAGTCTCTGACCTCTGAGGCTTTAGGGTCCTTGAATTCTGCCCTTAAAGCCCTGGGTTGACTACTTTAACTACTATTATCGGATTAAGATAAAAAGGTTTTCAATTCAGAGAGTGAGGAATGGTAATTAAATGCAGCCAAGTAAGTTTGTGTACACTGCACAGTTTGCGTCATGCCTATTTAAATGGATATTGAAGCTTTCTATTGTTTAAAACTAGCTTAAGTCATGATGTCAGTAGACCTCGTGCCCTTTTCTTACTGGTTCGCTTACTGGTCCTGTTTGTGCAGTGTTTCTTTACTTGAATCCTGTGAAGTTTTTATAAGACTCTGTTTCTTTAGCACGACAGGCTAAGCCAGATGTAGTTGTGAGTAAGATATGACTCAGTAGAGGAGTGGATCAGGCTGAGATTATTCTGTatgaatgtatgttttttttttttttttgtttgtttttttttatttactttcgcTCCACTCACTGTAAGCCAGCCAcagcgagaaaaaaaaaaactcacagcCGCTTTGCCGAAACAGTGGAgtcgtgttttttttgttgttgttgtttttagagGCTCTAGCATTGCCTCTCTTCTGTTCTGAGAAGTTGTACTGTATGTTACCTCCAAGGCGAAGAACCAGGGCAGTAAAAATGCCTATAATATGAggttggttgaccagcataaacGTCTAGCTCATGCATGCAGCACACTGCGAATGCTGACACGGGGTGCGCAAAGTTCATATTGCACTGTGAATTATGTATTTGTGACACAACCTCAAGGCTAGACCAAGAGCGTCtaacagaaaaaatattaattgtaaaataaaaaccttgTAAATATGTACATTCTAATTGTGTGAACAGATTGAATAAAGATCATCTTTTTCCATATTTAA

Function

NR:

description
PREDICTED: tribbles homolog 1-like

GO: NA

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249359.3 True 4014 mRNA 0.47 3 21931796 21944254

Neighbor

gene id symbol gene type direction distance location
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding upstream 59344 21860578 ~ 21872452 (+)
lrrc69 NA coding upstream 525607 21401489 ~ 21406189 (+)
otud6b otud6b,LOC107556329 coding upstream 536268 21390138 ~ 21395528 (+)
LOC107197622 LOC107197622 coding upstream 575461 21351562 ~ 21356335 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 580699 21330005 ~ 21351097 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 90931 22035185 ~ 22042547 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 197202 22141456 ~ 22148362 (+)
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding downstream 206115 22150369 ~ 22159424 (+)
mtdh NA coding downstream 216555 22160809 ~ 22169858 (+)
LOC103028646 laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding downstream 232626 22176880 ~ 22191152 (+)
G198968 NA non-coding upstream 89968 21820975 ~ 21841828 (+)
G198965 NA non-coding upstream 126057 21805474 ~ 21805739 (+)
G198947 NA non-coding upstream 275032 21656416 ~ 21656764 (+)
G198943 NA non-coding upstream 311951 21619638 ~ 21619845 (+)
G198939 NA non-coding upstream 370581 21561002 ~ 21561215 (+)
G199006 NA non-coding downstream 47278 21991532 ~ 21991627 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding downstream 252412 22196666 ~ 22200711 (+)
G199090 NA non-coding downstream 271625 22215879 ~ 22218387 (+)
G199097 NA non-coding downstream 316860 22261114 ~ 22261775 (+)
G199103 NA non-coding downstream 355640 22299894 ~ 22300471 (+)
LOC103037930 NA other upstream 548796 21358464 ~ 21383000 (+)
G198815 NA other upstream 1128906 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1656942 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1842809 20053028 ~ 20088987 (+)
G198540 NA other upstream 2684400 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 275011 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 885977 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3673674 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4641985 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 4887700 26831954 ~ 26892623 (+)

Expression


Co-expression Network