fam92a (fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073)


Basic Information

Item Value
gene id fam92a
gene name fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21860578 ~ 21872452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249360.3
GTACCTCCAACGCCATGGAAACGGCGGACGGCGTCCGTTTCTCTCGAAGCTAAAAATCATCACCCAGAGAAAATATACATCAGCGGGATCCTTTAAATCACTCAGTCCTTTAAAACTCACAGCCGCCGGCCGGAGACACCATGAACCGAAATCCAGACGCGCGGATAAGGGACACACAAACCAAGCAGATCCAGGAGAGCATCACCCATGTGGAGAAACACTTCGGAGACTTGTGCCAACTCTTTGCAGGATATGTTCGTAAAACTGCCCGTCTGAGGGACAAAGCCGATCTGTTGGTTAAGGAAGTCAGCCAGTATGCAGACACAGAAACACCTAACTTAAAACATGGACTGAAGAATTTTGCAGACCAGCTTGCCAAGATTCAGGACTATCGCCAAGCAGAGGTGGAAAGACTGGAAGCTAAAGTTGTTGAGCCGTTGAAAACCTATGGCTCTGTTGTGAAAATGAAAAGGGCAGACCTGAAGCTGACCCAGACCGCTCGGAACCGAGAGGCAAAGCAGATGCAGCAGCTGGAGAGAATGAGGCAGAGAAACCCCTCAGACAGGCAGATCATTTCACAGGCTGAGAGCGAACTCCAGAGAGCCACAATGGATGCCACGCGCACGACTCGCCAACTGGAGGAGACAATAGACGTGTTTGAAAGGCAGAAGATTCAGGATATCAAGAAAATCTTTATGGACTTTGTGAGTGTAGAGATGATCTTCCACGCCAAAGCTCTGGAGCTGTACACTACTGCCTATCAGCACATCCAGAATGTTGATGAGGAGGGCGATCTAGAGGTATTCAGGACCTCGCTGCACCCTCCTGACTATCAGTCTCGTTTAGACATAGTCCGTGCTAATTCCAGAACATCCTTGAACCGAACTGGAACATCCATGAGCAAATCCGGGACGTTGCAGTCGAGGAATCCAGCATCACAGGGGAAAAGGGAcgatgatgaggatgaggacgatgatgatgatgatgatgaagaggatgaggatgaggattTGGAGGATGTTACAGATGAGGAGAATTAAACTGAGTATAAGCAGGA
>XM_022683176.1
GTACCTCCAACGCCATGGAAACGGCGGACGGCGTCCGTTTCTCTCGAAGCTAAAAATCATCACCCAGAGAAAATATACATCAGCGGGATCCTTTAAATCACTCAGTCCTTTAAAACTCACAGCCGCCGGCCGGAGACACCATGAACCGAAATCCAGACGCGCGGATAAGGGACACACAAACCAAGCAGATCCAGGAGAGCATCACCCATGTGGAGAAACACTTCGGAGACTTGTGCCAACTCTTTGCAGGATATGTTCGTAAAACTGCCCGTCTGAGGGACAAAGCCGATCTGTTGGTTAAGGAAGTCAGCCAGTATGCAGACACAGAAACACCTAACTTAAAACATGGACTGAAGAATTTTGCAGACCAGCTTGCCAAGATTCAGGACTATCGCCAAGCAGAGGTGGAAAGACTGGAAGCTAAAGTTGTTGAGCCGTTGAAAACCTATGGCTCTGTTGTGAAAATGAAAAGGGCAGACCTGAAGCTGACCCAGACCGCTCGGAACCGAGAGGCAAAGCAGATGCAGCAGCTGGAGAGAATGAGGCAGAGAAACCCCTCAGACAGGCAGATCATTTCACAGGTGGGTCATCCTAATCTCCATTTCTTCAAAACAGCTGAGAGCGAACTCCAGAGAGCCACAATGGATGCCACGCGCACGACTCGCCAACTGGAGGAGACAATAGACGTGTTTGAAAGGCAGAAGATTCAGGATATCAAGAAAATCTTTATGGACTTTGTGAGTGTAGAGATGATCTTCCACGCCAAAGCTCTGGAGCTGTACACTACTGCCTATCAGCACATCCAGAATGTTGATGAGGAGGGCGATCTAGAGGTATTCAGGACCTCGCTGCACCCTCCTGACTATCAGTCTCGTTTAGACATAGTCCGTGCTAATTCCAGAACATCCTTGAACCGAACTGGAACATCCATGAGCAAATCCGGGACGTTGCAGTCGAGGAATCCAGCATCACAGGGGAAAAGGGAcgatgatgaggatgaggacgatgatgatgatgatgatgaagaggatgaggatgaggattTGGAGGATGTTACAGATGAGGAGAATTAAACTGAGTATAAGCAGGA

Function

NR:

description
PREDICTED: protein FAM92A1 isoform X1

GO: NA

KEGG:

id description
K23868 FAM92; protein FAM92

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249360.3 False 1057 mRNA 0.49 9 21860578 21872452
XM_022683176.1 True 1090 mRNA 0.49 9 21860578 21872452

Neighbor

gene id symbol gene type direction distance location
lrrc69 NA coding upstream 454389 21401489 ~ 21406189 (+)
otud6b otud6b,LOC107556329 coding upstream 465050 21390138 ~ 21395528 (+)
LOC107197622 LOC107197622 coding upstream 504243 21351562 ~ 21356335 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 509481 21330005 ~ 21351097 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1546597 20276631 ~ 20313981 (+)
LOC103033932 LOC108424940 coding downstream 59344 21931796 ~ 21944254 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 162733 22035185 ~ 22042547 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 269004 22141456 ~ 22148362 (+)
LOC103028967 rrm2b,LOC108425040,LOC107702093,LOC107556385,LOC107724293,LOC107565196,LOC108256937 coding downstream 277917 22150369 ~ 22159424 (+)
mtdh NA coding downstream 288357 22160809 ~ 22169858 (+)
G198968 NA non-coding upstream 18750 21820975 ~ 21841828 (+)
G198965 NA non-coding upstream 54839 21805474 ~ 21805739 (+)
G198947 NA non-coding upstream 203814 21656416 ~ 21656764 (+)
G198943 NA non-coding upstream 240733 21619638 ~ 21619845 (+)
G198939 NA non-coding upstream 299363 21561002 ~ 21561215 (+)
G199006 NA non-coding downstream 119080 21991532 ~ 21991627 (+)
G199056 rpl30,LOC105895124,LOC106589133,LOC106572903,LOC107568279,LOC107702100 non-coding downstream 324214 22196666 ~ 22200711 (+)
G199090 NA non-coding downstream 343427 22215879 ~ 22218387 (+)
G199097 NA non-coding downstream 388662 22261114 ~ 22261775 (+)
G199103 NA non-coding downstream 427442 22299894 ~ 22300471 (+)
LOC103037930 NA other upstream 477578 21358464 ~ 21383000 (+)
G198815 NA other upstream 1057688 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1585724 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1771591 20053028 ~ 20088987 (+)
G198540 NA other upstream 2613182 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 346813 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 957779 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 3745476 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 4713787 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 4959502 26831954 ~ 26892623 (+)

Expression


Co-expression Network