otud6b (otud6b,LOC107556329)


Basic Information

Item Value
gene id otud6b
gene name otud6b,LOC107556329
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21390138 ~ 21395528 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249369.3
aacaaacttttattttgaaaggtgtgttacagtgtgtaaaCTCGCGCTGGTCCGGTTCTCGGCATGGCTCGGTTCTGATTGTCGCTGCTGCTGGTAGCTGGTGTTCTGGTGTTCGGCTGGTGGTAATGGCAGATTTTACAGCAGCAGAGTAACAGTGCGGGGCCAGTGCAGGGAGTCCGTGCGGTTACTGTGATCCGGGTTATTCAAAGTAAAGATGGAGAAGGTGGAGTCTGCGGAGGAGCTACTAGTGAAAGAGCAGCGCAGGGAGAAGAAAGAGCTGCAAGCTAAAATCCAGAGTATGAAAAATGCTGTACCTAAAAATGACAAGAAAAGAAGGAAGCAACTGACTGAAGACATTGCCAAATTAGAGGCAGAGCTGAGTCAAAAACATGAGAATGAGCTCAAACTGCTACAGACCAACTCCAATGCTGCAGAGAagGTTGAGGAAGTTTCCAGTGCTGTAAATTCTATAAATCTGTCTGGCGGAGAGCAAGCCGATGGTAAGCAGCCCCGAGTAACCAAGGCTCAAAAGAGACGGGACAAGAAAGCTGCTCAGGAGAAGGAGCGAGAGAATCGCATTGCCGAAGCAGAGTTGGAGAACCTGTTAGGATCTAGACATCAGGAGGGTCTGAAACTAAAGCAGAAGTTGACAGAGAAGCATCTGCAGATCAAGGAGATCTCCTCTGATGGCCACTGCATGTACCGGGCTGTAGAGGATCAGCTGGTGGAGCGTGGGCGTGCACTTGGGATCCAGGAGCTCCGTGCTCAGACTGCTCAGTACATGAGGAGCCACTCAGGCGATTTCCTGCCTTTCCTTACCAACCCAAACACTGGAGACATGTACACTGAAGAGGAGTTTGAGAAGTACTGCAGTGATGTTGCGGAAACAGCAGCTTGGGGTGGACAGTTAGAGCTAAGAGCACTTACACAAGTCCTCCATTTACCAATAGAAGTCATTCAAGCGGATTCGCCTGCAATTGTTATAGGAGAAGAATATGACAAACTGCCAATTACCCTCATTTACATGAGACATGCCTATGGGTTGGGGGAGCACTACAACTCAGTGGAGCCACTGAAAGAAGTAGCAAGTGAGGAGCAGGAgtgaatcagtgtctcagatcACTGCAGGAAAGAGCATCCGTATTGGACCTTGCTTCAGTCTAGAAAGAGGCCAAATTAATATCTGGCTTTGCTTACCTCTAACTCTGACagactagatactgaatcagtgAGAGGAAGCTTTCATAATTAAAGACCCAAGGGATCAATAGCTGTCAGTTTTTCACAGTTACAGCTGTCGGTGCAGAAGTTTTTCCATACACTCATTGTGGGCATAAATTTTATGCATTATTGAGCTTTTAGTGATTTATTTAAATGGTATGTTTTCTGGAGCAGAGCATTGTACAGCATTGACAGAAATCAAATCAGTGCACTGgttttctgaaattaaattaattaaaattacacaaacaaaccaacatgcACATTTATTGGATTGACCGGTAGTATACATTGGACACTGGAAAGGTCCTAAGTGCACATTGCAGATCTGAGAAAGATGATTGTAGATTTACACAAGTTTGAAATGTCTTTTAAGCTATTTCTAAACCACTGCAGATTCTACAATCATCAGTTCAAGCTAACCAGAAGTTGTTGAGAAGTGTAGTCACTTTAGCAAGgtctgaaaaaagaacaaaactgtCACCCTCACCTGAAAGGAAATTGGTTTGGATGGTCTGGAATATCTATAGAATAATCAAGGCAAAGGCCTAAACTGGAAACTGCTGTAACATCAGTGTCACTGTCTACACCCATGTGAGTTTTAACAGCCTGGGAGAAAGCTTTACAGTAAGATAAGACAAAATAGAGTTGACTAGCCACAACAGTCATAGTATGTTAAGAGAAGTACAGGTGGGGCATTCAAGACCACAgtaccaactgttaagcatggtggtgggagcatcattCTCTTGGCTTCTTTTGGAATTGGTACATTGTGCAAACAGTGACCCCAAACATGCATTAATGGTTATTGTGCAATTGCTCAAACCATTTAACATTGAGTTTTTTGCAATGGCCTCCCTCAAGTACTGACCTTGAATTTGTGAACTGATTAAAAGTTGGGTCAGTGATAGAAATTCAACACATTTAATTGAACTCTTCCTCGTGTGAAGAATGAGTTTGCTATTGCCCGAaggatttatataaaaaaaaaaagaattcttgTTTTTGTCTGCTAGCATCGATGTATGTTTTAAGCTCATTCTGCCCCAGGAACAGACTGCCAAGTctgtatgaaataataaaaaaagtcaattaATGCCATGACATCCATGTTTATGATGAGTGTGGGTAAACATATGAACATGACTGTACAACAATATGTGTGTAAGATTATGGATTCtgtaaaaacatacatataaacaaaacatactgtataaggAAAACATATGATCTCAGTAAGGATGAAGGCTACATGTTACAGCTTTCTtggaatttaaaaaacaaataataaatacatttagtttCCACTTCCTGTGTTTTTAGAAAATCTTGACAGACAGGAAATGACtttaaaaatgcacttaaaactaGTCTGTATGTGCCGTAAAGCTAAACCATGTTTGTGAATAAAATTATGGTGTGGGATGTTTATTTGTAAACCTGCATACAGTTAGAGGAAATCCACTGGAGTGGCATCTAATTTGCTGTGCTGTTGTAGCAAAAAACTGGAACCTCCATCTGGGGCAATGTCCCCTGGGCAAATTTTGTAAATTTGTCATCCAGGTTTTACAGAATGTACCATTTTTGTGTCAGTCCTTCAGAGGAATTTAGCTTGGCCAGCATAGTGTGGCATGTTTTTGCCTAGTTCAGCTGGATGTCTAGCTTGTCAGTTACTGAAGGATTTCCTAATATCATTTTTAATCTGCAAGTTTTATTAATAGTACAAAcctaaaattgctattttctcACCATTGTCAATTCATGAATTAATTATTCcacttcattttaaataaaaaaatacaaaaagta
>XM_022683172.1
GTCCTCCTGTGTGAAATGTCCCAGGACAAGAAAGCTGCTCAGGAGAAGGAGCGAGAGAATCGCATTGCCGAAGCAGAGTTGGAGAACCTGTTAGGATCTAGACATCAGGAGGGTCTGAAACTAAAGCAGAAGTTGACAGAGAAGCATCTGCAGATCAAGGAGATCTCCTCTGATGGCCACTGCATGTACCGGGCTGTAGAGGATCAGCTGGTGGAGCGTGGGCGTGCACTTGGGATCCAGGAGCTCCGTGCTCAGACTGCTCAGTACATGAGGAGCCACTCAGGCGATTTCCTGCCTTTCCTTACCAACCCAAACACTGGAGACATGTACACTGAAGAGGAGTTTGAGAAGTACTGCAGTGATGTTGCGGAAACAGCAGCTTGGGGTGGACAGTTAGAGCTAAGAGCACTTACACAAGTCCTCCATTTACCAATAGAAGTCATTCAAGCGGATTCGCCTGCAATTGTTATAGGAGAAGAATATGACAAACTGCCAATTACCCTCATTTACATGAGACATGCCTATGGGTTGGGGGAGCACTACAACTCAGTGGAGCCACTGAAAGAAGTAGCAAGTGAGGAGCAGGAgtgaatcagtgtctcagatcACTGCAGGAAAGAGCATCCGTATTGGACCTTGCTTCAGTCTAGAAAGAGGCCAAATTAATATCTGGCTTTGCTTACCTCTAACTCTGACagactagatactgaatcagtgAGAGGAAGCTTTCATAATTAAAGACCCAAGGGATCAATAGCTGTCAGTTTTTCACAGTTACAGCTGTCGGTGCAGAAGTTTTTCCATACACTCATTGTGGGCATAAATTTTATGCATTATTGAGCTTTTAGTGATTTATTTAAATGGTATGTTTTCTGGAGCAGAGCATTGTACAGCATTGACAGAAATCAAATCAGTGCACTGgttttctgaaattaaattaattaaaattacacaaacaaaccaacatgcACATTTATTGGATTGACCGGTAGTATACATTGGACACTGGAAAGGTCCTAAGTGCACATTGCAGATCTGAGAAAGATGATTGTAGATTTACACAAGTTTGAAATGTCTTTTAAGCTATTTCTAAACCACTGCAGATTCTACAATCATCAGTTCAAGCTAACCAGAAGTTGTTGAGAAGTGTAGTCACTTTAGCAAGgtctgaaaaaagaacaaaactgtCACCCTCACCTGAAAGGAAATTGGTTTGGATGGTCTGGAATATCTATAGAATAATCAAGGCAAAGGCCTAAACTGGAAACTGCTGTAACATCAGTGTCACTGTCTACACCCATGTGAGTTTTAACAGCCTGGGAGAAAGCTTTACAGTAAGATAAGACAAAATAGAGTTGACTAGCCACAACAGTCATAGTATGTTAAGAGAAGTACAGGTGGGGCATTCAAGACCACAgtaccaactgttaagcatggtggtgggagcatcattCTCTTGGCTTCTTTTGGAATTGGTACATTGTGCAAACAGTGACCCCAAACATGCATTAATGGTTATTGTGCAATTGCTCAAACCATTTAACATTGAGTTTTTTGCAATGGCCTCCCTCAAGTACTGACCTTGAATTTGTGAACTGATTAAAAGTTGGGTCAGTGATAGAAATTCAACACATTTAATTGAACTCTTCCTCGTGTGAAGAATGAGTTTGCTATTGCCCGAaggatttatataaaaaaaaaaagaattcttgTTTTTGTCTGCTAGCATCGATGTATGTTTTAAGCTCATTCTGCCCCAGGAACAGACTGCCAAGTctgtatgaaataataaaaaaagtcaattaATGCCATGACATCCATGTTTATGATGAGTGTGGGTAAACATATGAACATGACTGTACAACAATATGTGTGTAAGATTATGGATTCtgtaaaaacatacatataaacaaaacatactgtataaggAAAACATATGATCTCAGTAAGGATGAAGGCTACATGTTACAGCTTTCTtggaatttaaaaaacaaataataaatacatttagtttCCACTTCCTGTGTTTTTAGAAAATCTTGACAGACAGGAAATGACtttaaaaatgcacttaaaactaGTCTGTATGTGCCGTAAAGCTAAACCATGTTTGTGAATAAAATTATGGTGTGGGATGTTTATTTGTAAACCTGCATACAGTTAGAGGAAATCCACTGGAGTGGCATCTAATTTGCTGTGCTGTTGTAGCAAAAAACTGGAACCTCCATCTGGGGCAATGTCCCCTGGGCAAATTTTGTAAATTTGTCATCCAGGTTTTACAGAATGTACCATTTTTGTGTCAGTCCTTCAGAGGAATTTAGCTTGGCCAGCATAGTGTGGCATGTTTTTGCCTAGTTCAGCTGGATGTCTAGCTTGTCAGTTACTGAAGGATTTCCTAATATCATTTTTAATCTGCAAGTTTTATTAATAGTACAAAcctaaaattgctattttctcACCATTGTCAATTCATGAATTAATTATTCcacttcattttaaataaaaaaatacaaaaagta

Function

symbol description
otud6b Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including OTUD6B (OTU deubiquitinase 6B).

NR:

description
OTU domain-containing protein 6B

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K18342 OTUD6; OTU domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249369.3 True 3033 mRNA 0.41 7 21390138 21395528
XM_022683172.1 False 2519 mRNA 0.39 4 21391713 21395528

Neighbor

gene id symbol gene type direction distance location
LOC107197622 LOC107197622 coding upstream 33803 21351562 ~ 21356335 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 39041 21330005 ~ 21351097 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1076157 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 1135358 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 1234668 20143895 ~ 20155470 (+)
lrrc69 NA coding downstream 5961 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 465050 21860578 ~ 21872452 (+)
LOC103033932 LOC108424940 coding downstream 536268 21931796 ~ 21944254 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 639657 22035185 ~ 22042547 (+)
azin1b azin1b,LOC108425019,LOC108256938 coding downstream 745928 22141456 ~ 22148362 (+)
G198848 NA non-coding upstream 299107 21090756 ~ 21091031 (+)
G198842 NA non-coding upstream 329926 21060000 ~ 21060212 (+)
G198839 NA non-coding upstream 343249 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 458614 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 574567 20815141 ~ 20815571 (+)
G198881 NA non-coding downstream 3204 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 165474 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 224110 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 260888 21656416 ~ 21656764 (+)
G198965 NA non-coding downstream 409946 21805474 ~ 21805739 (+)
LOC103037930 NA other upstream 7138 21358464 ~ 21383000 (+)
G198815 NA other upstream 587248 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1115284 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1301151 20053028 ~ 20088987 (+)
G198540 NA other upstream 2142742 19246972 ~ 19247396 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 823737 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1434703 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4222400 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5190711 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 5436426 26831954 ~ 26892623 (+)

Expression


Co-expression Network