LOC103038471 (sfpq,LOC107669930,LOC107722137,LOC107566770)


Basic Information

Item Value
gene id LOC103038471
gene name sfpq,LOC107669930,LOC107722137,LOC107566770
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21330005 ~ 21351097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249376.3
CCCTTTGTTGCGCGGCTCTGTCAGCCATTTTACGAAGAGCAGTCGGTGTAGGACAGACGGTGGTGTGACTCTTAGTCGCTGAGTTTCTACTGTTTGTACCACTGAGtgtagttttatatttactgaaatCTATTTAACGGTTTTTACGCCCTAAAGCTCCAGCCATGTCTCGGGACCGGTTCAGGAACAACCGCGGAGGAGGATTCCAGCCACGCGGCCGCGGTGGGATGGGGATTGGAGGAGGGATGCGCGGAGGAATGGGGATGGGGATGAGAATGGGAAGTCCGAATTTCCGCAATCAGAACAATCCTCAGTTTCCCTTTCAGAACCGCGGCAACCAGATGAGCGGCGGTTTTAAACAGAACCAGGGGAATCAGCAGAACCAGGGGAATCAGCAGAACCAGGCGCAGACTCCTAAACAGACCACCCCCCAGAAACAGGACGGAGCTAACGCCGCACAGAAGCCCGAGATCAAATCTCCCCCACCATCAACACCACAGCCACAGCAGAAGACTCCACAGCCACAGGAGAAAACACCACAACAGCaaactcagcagcagcagcaacagaagACCCcgcaacaacaacagcagcagcaacagaagACCccacagcagcaacagcagccaAAACcgccgcagcagcagcaaggCCCGGCCCCCCAACAGAACAAACCCCCGGCACAGCAGACCCAGCAGCCGCAGGTCGGTAACGCAGGTCCGCCGAAACTGCAGTCGCCTCCGCCCAAAAACACCAACATGAAGCAGGAGCAAATAACCCCACAGAACCAGGCCCGAAAACCTCCACAGAGACCAAACGCTGGAAACAACCAGAAACCGCCCCAGGCTGAGCAGGAGTCGGCCTCGCACACGGAGTTGAAGGCGAAGCTGTCAATGCTGCGCAAACCTGGAGAGAAGACCTACACACAGCGATGCCGTTTGTTCATTGGAAACCTGCCCAATGATATCACTGAGGCAGAGTTCAGAAAGCTGTTTGCAAAGTATGGAGAGCCCAGTGAGACCTTCATCAACCAGGGCAAAGGTTTTGGATTCATCAGACTGGAGTCCCGTGCTGTAGCTGAGATCGCAAAAGCTGAACTGGATGACATACCAATGAAGGGCAGACCACTAAGGGTTCGCTTTGCAACTCACTCTGCTGCTCTGTCTGTGCGCAACCTGTCCCCCTTTGTCTCCAACGAGCTGCTCGAAGAGGCGTTCTCTCAGTTTGGTCAAGTCGAGAGAGCCATTGTCGTTGTCGATGACCGCGGACGCTCAACTGGAAAGGGAATTGTTGAGTTTGCCACCAAGCCTGCGGCACGGAAGGCACTTGATCGGTGTGCCGATGGCGTCTTCCTGCTTACCTCGGCACCACGTCCAATTGTTGTTGAACCATTAGAACAGTATGACGATGAGGATGGTCTGCCAGAGAAGCTTGCCCAGAAGAATCCAAATTATCAGAAagagagagagcagcctCCACGCTTTGCTCGACCGGGTACCTTTGAGTTTGAATACTCCCAGCGTTGGAAGTCCCTTGATGACATGGAGAAACAACAGAGGCAGCAAGTTGAGAAAAATATCCGCGAGGCCCGTGAAAAACTGGAGGCGGAAATGGACGATGCCTATCATGAGCATCAAGCTAATTTACTTCGCCAGGatcTTCTCAGGCGCCAGGAGGAGCTGCGACGCATGGAAGAGATGCATAGCCAGGAAATGCAGAAACGGAAAGAGATGCAGCTAAGACAAGAGGAGGAACGCCGTAGACGTGAGGAGGAACTGCTTCGGCAGAGGGAGCTGGAGGAGCAGATGAGGCGCAAGCGTGAGGAGTCCTACAGGATGGGTGGCTTCATGGATAATagggagagggagatgAGGATGAATGCTGGAAGTGGTCTTGGGATGGCAGaTATGCCTTTTGGCTCCTCCAACCAGAAGTTTCAGTTGTCTGGAATGAACTTTGACGGTCACCAGGGAATGGGTGGAGCAGGAGCAGGGGGCATGGTGCCCAATGAAATGCACCATGAGCGTTTCTCTCAAGGTGGCCCTGGAGGTCCTAGGGGGATGGGTCCTGGCAATGCAGGATTTGGCAGGGTCCGTGAGGAATTCGATGGACCTGCCAAGAAGCCACGCTTCTGATCtggcacttttatattatagAGCTCATGTTTGGATTCCCAGAGGTTCTGGGGTCTTAAtgtatttaagtttaaaatgtttctttacagttttagactcaatgtttttttgtaagttGTATGTTTCAAGTTAAAGTAGTGAACTGCTCAGCGGGAGTGATCTCTTGCTTAGTTTATCTTATGTACACTCTTACTTATATCATGCAATGTTACTTGTTATGCTGGTAATTCTTGTAAGTTGTTTTGATCTCTATGGCCGTGTTCTATGCCATTCAACGTTTTTGAAGTAATCCATGTAAATTTACAATAAAGCGTCCAGTTGGTTCTTTAAACTCCA
>XM_015605818.2
CCCTTTGTTGCGCGGCTCTGTCAGCCATTTTACGAAGAGCAGTCGGTGTAGGACAGACGGTGGTGTGACTCTTAGTCGCTGAGTTTCTACTGTTTGTACCACTGAGtgtagttttatatttactgaaatCTATTTAACGGTTTTTACGCCCTAAAGCTCCAGCCATGTCTCGGGACCGGTTCAGGAACAACCGCGGAGGAGGATTCCAGCCACGCGGCCGCGGTGGGATGGGGATTGGAGGAGGGATGCGCGGAGGAATGGGGATGGGGATGAGAATGGGAAGTCCGAATTTCCGCAATCAGAACAATCCTCAGTTTCCCTTTCAGAACCGCGGCAACCAGATGAGCGGCGGTTTTAAACAGAACCAGGGGAATCAGCAGAACCAGGGGAATCAGCAGAACCAGGCGCAGACTCCTAAACAGACCACCCCCCAGAAACAGGACGGAGCTAACGCCGCACAGAAGCCCGAGATCAAATCTCCCCCACCATCAACACCACAGCCACAGCAGAAGACTCCACAGCCACAGGAGAAAACACCACAACAGCaaactcagcagcagcagcaacagaagACCCcgcaacaacaacagcagcagcaacagaagACCccacagcagcaacagcagccaAAACcgccgcagcagcagcaaggCCCGGCCCCCCAACAGAACAAACCCCCGGCACAGCAGACCCAGCAGCCGCAGGTCGGTAACGCAGGTCCGCCGAAACTGCAGTCGCCTCCGCCCAAAAACACCAACATGAAGCAGGAGCAAATAACCCCACAGAACCAGGCCCGAAAACCTCCACAGAGACCAAACGCTGGAAACAACCAGAAACCGCCCCAGGCTGAGCAGGAGTCGGCCTCGCACACGGAGTTGAAGGCGAAGCTGTCAATGCTGCGCAAACCTGGAGAGAAGACCTACACACAGCGATGCCGTTTGTTCATTGGAAACCTGCCCAATGATATCACTGAGGCAGAGTTCAGAAAGCTGTTTGCAAAGTATGGAGAGCCCAGTGAGACCTTCATCAACCAGGGCAAAGGTTTTGGATTCATCAGACTGGAGTCCCGTGCTGTAGCTGAGATCGCAAAAGCTGAACTGGATGACATACCAATGAAGGGCAGACCACTAAGGGTTCGCTTTGCAACTCACTCTGCTGCTCTGTCTGTGCGCAACCTGTCCCCCTTTGTCTCCAACGAGCTGCTCGAAGAGGCGTTCTCTCAGTTTGGTCAAGTCGAGAGAGCCATTGTCGTTGTCGATGACCGCGGACGCTCAACTGGAAAGGGAATTGTTGAGTTTGCCACCAAGCCTGCGGCACGGAAGGCACTTGATCGGTGTGCCGATGGCGTCTTCCTGCTTACCTCGGCACCACGTCCAATTGTTGTTGAACCATTAGAACAGTATGACGATGAGGATGGTCTGCCAGAGAAGCTTGCCCAGAAGAATCCAAATTATCAGAAagagagagagcagcctCCACGCTTTGCTCGACCGGGTACCTTTGAGTTTGAATACTCCCAGCGTTGGAAGTCCCTTGATGACATGGAGAAACAACAGAGGCAGCAAGTTGAGAAAAATATCCGCGAGGCCCGTGAAAAACTGGAGGCGGAAATGGACGATGCCTATCATGAGCATCAAGCTAATTTACTTCGCCAGGatcTTCTCAGGCGCCAGGAGGAGCTGCGACGCATGGAAGAGATGCATAGCCAGGAAATGCAGAAACGGAAAGAGATGCAGCTAAGACAAGAGGAGGAACGCCGTAGACGTGAGGAGGAACTGCTTCGGCAGAGGGAGCTGGAGGAGCAGATGAGGCGCAAGCGTGAGGAGTCCTACAGGATGGGTGGCTTCATGGATAATagggagagggagatgAGGATGAATGCTGGAAGTGGTCTTGGGATGGCAGaTATGCCTTTTGGCTCCTCCAACCAGAAGTTTCAGTTGTCTGGAATGAACTTTGACGGTCACCAGGGAATGGGTGGAGCAGGAGCAGGGGGCATGGTGCCCAATGAAATGGGGCATCGAGTGGTGGACGCAGGGTAACCGCCAAGCCTTTTGCAAATAAgATCCTCACAGCACACGTTAGTACTTTTCTTCAAACCTACTCTATAGGTTGTTGGAGAATAAATGTAATCTGAGACAGCACTCATTGAGGCTCTCAACCACACACTCCTTATGAAGAAGAAACCTAAAGGGAGAGTGACAGAATGTATTGGACAGCAGAAGGATAACCGTTGTATTTTGCAATGCTTCAAGTCACCTGTTAGATTACGatcggattttatttttttattttttttttttttggacataaACAGTTGTAGGTGAACAACTGTTCCCATTGATTTATAACGAAGGAAATTAAATTccatctgttccaatactttacAACTTATCTTTACACGTATCTGTGCTATGTTGTCCACAACAGGTTAAATTCTGGGGGTTGTGTTTCACTTTTATCACTGTTGTATCTGGAGTTGCCGTTAATTCTGGCGCCGATCCAGTGTAGAGGTCAGGAGCATGCAAGCTGATAGCGCCGAACACAAGGTTCTGTGAATGTGGGTCAATAGTCCTGTCTGACCTGCATTACACAGTGGCCAGCTAGGGTGTTTTGTAAAAGGTTTGTAAAATAAAGATTGTTTTTACCATCTGA
>XM_015605819.2
CCCTTTGTTGCGCGGCTCTGTCAGCCATTTTACGAAGAGCAGTCGGTGTAGGACAGACGGTGGTGTGACTCTTAGTCGCTGAGTTTCTACTGTTTGTACCACTGAGtgtagttttatatttactgaaatCTATTTAACGGTTTTTACGCCCTAAAGCTCCAGCCATGTCTCGGGACCGGTTCAGGAACAACCGCGGAGGAGGATTCCAGCCACGCGGCCGCGGTGGGATGGGGATTGGAGGAGGGATGCGCGGAGGAATGGGGATGGGGATGAGAATGGGAAGTCCGAATTTCCGCAATCAGAACAATCCTCAGTTTCCCTTTCAGAACCGCGGCAACCAGATGAGCGGCGGTTTTAAACAGAACCAGGGGAATCAGCAGAACCAGGGGAATCAGCAGAACCAGGCGCAGACTCCTAAACAGACCACCCCCCAGAAACAGGACGGAGCTAACGCCGCACAGAAGCCCGAGATCAAATCTCCCCCACCATCAACACCACAGCCACAGCAGAAGACTCCACAGCCACAGGAGAAAACACCACAACAGCaaactcagcagcagcagcaacagaagACCCcgcaacaacaacagcagcagcaacagaagACCccacagcagcaacagcagccaAAACcgccgcagcagcagcaaggCCCGGCCCCCCAACAGAACAAACCCCCGGCACAGCAGACCCAGCAGCCGCAGGTCGGTAACGCAGGTCCGCCGAAACTGCAGTCGCCTCCGCCCAAAAACACCAACATGAAGCAGGAGCAAATAACCCCACAGAACCAGGCCCGAAAACCTCCACAGAGACCAAACGCTGGAAACAACCAGAAACCGCCCCAGGCTGAGCAGGAGTCGGCCTCGCACACGGAGTTGAAGGCGAAGCTGTCAATGCTGCGCAAACCTGGAGAGAAGACCTACACACAGCGATGCCGTTTGTTCATTGGAAACCTGCCCAATGATATCACTGAGGCAGAGTTCAGAAAGCTGTTTGCAAAGTATGGAGAGCCCAGTGAGACCTTCATCAACCAGGGCAAAGGTTTTGGATTCATCAGACTGGAGTCCCGTGCTGTAGCTGAGATCGCAAAAGCTGAACTGGATGACATACCAATGAAGGGCAGACCACTAAGGGTTCGCTTTGCAACTCACTCTGCTGCTCTGTCTGTGCGCAACCTGTCCCCCTTTGTCTCCAACGAGCTGCTCGAAGAGGCGTTCTCTCAGTTTGGTCAAGTCGAGAGAGCCATTGTCGTTGTCGATGACCGCGGACGCTCAACTGGAAAGGGAATTGTTGAGTTTGCCACCAAGCCTGCGGCACGGAAGGCACTTGATCGGTGTGCCGATGGCGTCTTCCTGCTTACCTCGGCACCACGTCCAATTGTTGTTGAACCATTAGAACAGTATGACGATGAGGATGGTCTGCCAGAGAAGCTTGCCCAGAAGAATCCAAATTATCAGAAagagagagagcagcctCCACGCTTTGCTCGACCGGGTACCTTTGAGTTTGAATACTCCCAGCGTTGGAAGTCCCTTGATGACATGGAGAAACAACAGAGGCAGCAAGTTGAGAAAAATATCCGCGAGGCCCGTGAAAAACTGGAGGCGGAAATGGACGATGCCTATCATGAGCATCAAGCTAATTTACTTCGCCAGGatcTTCTCAGGCGCCAGGAGGAGCTGCGACGCATGGAAGAGATGCATAGCCAGGAAATGCAGAAACGGAAAGAGATGCAGCTAAGACAAGAGGAGGAACGCCGTAGACGTGAGGAGGAACTGCTTCGGCAGAGGGAGCTGGAGGAGCAGATGAGGCGCAAGCGTGAGGAGTCCTACAGGATGGGTGGCTTCATGGATAATagggagagggagatgAGGATGAATGCTGGAAGTGGTCTTGGGATGGCAGaTATGCCTTTTGGCTCCTCCAACCAGAAGTTTCAGTTGTCTGGAATGAACTTTGACGGTCACCAGGGAATGGGTGGAGCAGGAGCAGGGGGCATGGTGCCCAATGAAATGGGGCATCGAGTGGTGGACGCAGGGTAACCGCCAAGCCTTTTGCAAATAAgGTTGTTGGAGAATAAATGTAATCTGAGACAGCACTCATTGAGGCTCTCAACCACACACTCCTTATGAAGAAGAAACCTAAAGGGAGAGTGACAGAATGTATTGGACAGCAGAAGGATAACCGTTGTATTTTGCAATGCTTCAAGTCACCTGTTAGATTACGatcggattttatttttttattttttttttttttggacataaACAGTTGTAGGTGAACAACTGTTCCCATTGATTTATAACGAAGGAAATTAAATTccatctgttccaatactttacAACTTATCTTTACACGTATCTGTGCTATGTTGTCCACAACAGGTTAAATTCTGGGGGTTGTGTTTCACTTTTATCACTGTTGTATCTGGAGTTGCCGTTAATTCTGGCGCCGATCCAGTGTAGAGGTCAGGAGCATGCAAGCTGATAGCGCCGAACACAAGGTTCTGTGAATGTGGGTCAATAGTCCTGTCTGACCTGCATTACACAGTGGCCAGCTAGGGTGTTTTGTAAAAGGTTTGTAAAATAAAGATTGTTTTTACCATCTGA

Function

symbol description
sfpq Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development and negative regulation of axon regeneration. Located in neuron projection and nucleus. Is expressed in brain; eye; gut; heart; and muscle cell. Orthologous to human SFPQ (splicing factor proline and glutamine rich).

NR:

description
PREDICTED: splicing factor, proline- and glutamine-rich

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249376.3 False 2471 mRNA 0.51 10 21330005 21338431
XM_015605818.2 True 2655 mRNA 0.51 12 21330005 21351097
XM_015605819.2 False 2609 mRNA 0.51 12 21330005 21351097

Neighbor

gene id symbol gene type direction distance location
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1016024 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 1075225 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 1174535 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 1187100 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 1648859 19675126 ~ 19681146 (+)
LOC107197622 LOC107197622 coding downstream 465 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 39041 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 50392 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 509481 21860578 ~ 21872452 (+)
LOC103033932 LOC108424940 coding downstream 580699 21931796 ~ 21944254 (+)
G198848 NA non-coding upstream 238974 21090756 ~ 21091031 (+)
G198842 NA non-coding upstream 269793 21060000 ~ 21060212 (+)
G198839 NA non-coding upstream 283116 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 398481 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 514434 20815141 ~ 20815571 (+)
G198881 NA non-coding downstream 47635 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 209905 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 268541 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 305319 21656416 ~ 21656764 (+)
G198965 NA non-coding downstream 454377 21805474 ~ 21805739 (+)
G198815 NA other upstream 527115 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1055151 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1241018 20053028 ~ 20088987 (+)
G198540 NA other upstream 2082609 19246972 ~ 19247396 (+)
G198535 NA other upstream 2124347 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 7367 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 868168 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1479134 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4266831 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5235142 26586239 ~ 26613188 (+)

Expression


Co-expression Network