lpcat1 (lpcat1,LOC107754844,LOC107694330)


Basic Information

Item Value
gene id lpcat1
gene name lpcat1,LOC107754844,LOC107694330
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20276631 ~ 20313981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249420.3
gagcgagggggcggggccggGGTGATGAGCGCTGCGGGCGAGGGCAGCTCAGAGCGGGTTTGTTATTCCTCTCAAACAGTGGAAGAGTTtcagaaacagcagctttacacaCGGGGAGACTGTGGAAACATGAGGTTCGCGAAAAGGAAACGGTTAACCCTGGCGGACGGAGAGGACTCTCAGCTCTCAGCACAGTTTATTAACCCCTTCATACACGAGCTGCGGCTCACCGCTCTCCAGAAAGTCAAGATTGCAGTGATGACAGTGACCCTCTTCCCAGTTCGATTGCTCTTTGCTGCATTTATGATGTTGTTGGCGTGGCCTTTTGCCTTTGTGGCCACCGTGGGCTGTTCAGAGGACGCAGTGGAGCCTCTGTCCTGGTGGAGATGGCTGGTGGATCTGGCCCTGAAGGCCATCATGAGGGCGATGTGGTTTTCTGGAGGTTTCCATTGGGTGCGTGTGAAAGGAAGACCAGCTCTACCCAGTGAAGCACCCATCCTAACACTGGCACCACACTCCTCATACTTCGATGCTATCCCTGTGACCAGGACCATGGCCTCTATCGTCATGAAGGCAGAGAGCAGAAATGTTCCCGTCTGGGGAACCCTGATCAAGTTTATCCGGCCAGTGTTCGTGTCCCGCTCAGATCAGGACTCTCGCAGGAAGACTGTAGAAGAGATCAAACGCAGAGCTTTCTCTGCAGGAGAGTGGCctcagATGATGGTATTTCCAGAGGGGACGTGCACCAACAGATCCTGCCTCATTGCGTTTAAGCCTGGTGCATTTATTCCAGGCGTTCCTGTTCAGCCGGTAGTTCTGCGCTATCCCAATGAGATGGACACAATATCGTGGACATGGCAGGGACCAGGAGCATTCAAGATTTTATGGCTCACTTTGTGTCAGCTGCATAATTCTATAGAAATAGAGTATCTCCCTACATACACTCCTTcagaagaggagaaaagagaccCAGCTCTGTTTGCGAGCAACGTGAGGTGTATAATGGCCAAGGCTCTGCAGCTGCCTACCACTGACTACTCATTCGAGGACTGTCGTCTTGCGATGGCCAAAGGCCCCCTGTGTCTGCCCAGTCATACCTGTCTGCTGGAGTTCTCCAGGCTGGTGCGTAGGCTCGGACTGAATGGAAGAGTGACGGATCAATTCCTGCATGAAGAGAGCAGTCGTGCACGAAAGCTCTGTGGACACAAACTAAGCCTGGAGGCTTTTGCAGAATATGTAAACCTGCCTATTACAGAAGCACTGCAGGACATCTTTGCCCTCTTTGAGGAGcatgaTCAGATGGATGTGAGGGAGTATGTCATTGCTCTCTCTGTGGTCTGCAGACCTGTCAGATATTTGGAGACCATTCAGCTGGCCTTCAGGATGTTTGAGGCTGAAGAGGATGGGGCTATAGTAGAGGACGAGCTAGCTGTCATTCTGAAAACAGCTCTTGGAGTGGCAGATCTCACTGTCTGTGATGTCTTCAGAGCCATTGATACTGGAGACAAGGGGAAGATCACATTTGagGATTTCTGCACGTTTTTGGAGGGCTGTCCAAACTTTATAGAGCTGTACCACTGTGTTCCCGATCAGACCTCACACACCTTTTCTGAACCCTCAGTTTCCAtaaccaaccacacacacaacaagaaGCACGACTAAGACATGTTTTGTTgatttgcgtgtgtgtgtgtgtgtgtgtatatgtatgtgtgtctgaatgcatttatattacCACTGAGTGTGAGTATAAGGGAGAGATTTTTTTGAGGATATTTTGAAATTAAACTTCATTTGTGTGGATTTGGGCAATTTActcattatttttcttctttatcttttttatctgtttttttttactgacagatttttaaaatgatcttcagaaatgtaatgggacttttttaatatatatttttttattcctcctTTGCTTTTTGGACAGGTAATCTATTTATTCCAGGCCAAGCtttctatattatataaagtTTCATTCTGTTTGTAATTTTGAGACATGTTGAGAGATTTGATTTTAATACAGAAATACTGAAAACCCTTTGA

Function

symbol description
lpcat1 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 1

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity molecular_function

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249420.3 True 2061 mRNA 0.47 14 20276631 20313981

Neighbor

gene id symbol gene type direction distance location
LOC103030452 irx4 coding upstream 21851 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 121161 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 133726 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 595485 19675126 ~ 19681146 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding upstream 605415 19660446 ~ 19671216 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 1016024 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 1037581 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 1076157 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 1087508 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 1546597 21860578 ~ 21872452 (+)
G198730 ndufs6 non-coding upstream 4651 20268689 ~ 20271980 (+)
G198727 NA non-coding upstream 54344 20222046 ~ 20222287 (+)
LOC111195527 NA non-coding upstream 103824 20171956 ~ 20172807 (+)
G198664 NA non-coding upstream 294381 19981683 ~ 19982250 (+)
G198661 NA non-coding upstream 300574 19975753 ~ 19976057 (+)
G198754 NA non-coding downstream 29938 20343919 ~ 20344324 (+)
G198755 NA non-coding downstream 33330 20347311 ~ 20347588 (+)
G198767 NA non-coding downstream 271743 20585724 ~ 20586099 (+)
G198777 NA non-coding downstream 404897 20718878 ~ 20719619 (+)
G198776 NA non-coding downstream 436719 20750700 ~ 20760029 (+)
mrpl36 mrpl36 other upstream 1777 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 187644 20053028 ~ 20088987 (+)
G198540 NA other upstream 1029235 19246972 ~ 19247396 (+)
G198535 NA other upstream 1070973 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 1094153 19166346 ~ 19182478 (+)
G198815 NA other downstream 488390 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1044483 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1905284 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 2516250 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 5303947 25617928 ~ 25620135 (+)

Expression


Co-expression Network