LOC103030452 (irx4)


Basic Information

Item Value
gene id LOC103030452
gene name irx4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20249200 ~ 20254780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249436.3
TAAGAAGATCGCTGCAGATGAACTGATGACCCTCAGCTCCACTTTCTGCATTGAGATGCGCTTCCTCCTGCCTGCTGGACTTTCATCTTAGCCATGTCATACACTCAGTTTGGCTATTCCTATTCAGCAGCTCCACAGCTTCTATGGTCCTCCAATGCTCTGGGTGCGTGCTATGAGTCTGGTAGCGGTTCTCCATTAGAAGCTGGAGTAGTGGCCTCTCCGCAGAGCTCTCTCTGCTGCCCGGTGTACGACAGCAGGCTGGTGGCCTCTACCAGACATGACCTGAACTCCACTTATGGGAAAAACCACAGCTATGGGACTTACAGTTCATATGGGACTGACTCgacctctctctattctctgGGCAAGCTTGGTGAGAAAGATGGAACAGCATCAGCACAGTCGAGGGTCACCCAGGGGCCAGGGTATTACCCATGTGATCATCCATTCGGACAATATCAATATGAAGGATATGGATACAGCTCTATGGATGTTAGTACGAGAAGGAAGAACGCCACCAGGGAGACCACCAGCACTCTGAAGGCGTGGCTGCAGGAGCACAAGAGGAACCCGTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGAAGACTCAAGAAGGAGAACAAAATGACCTGGTCCCCTCGCAACAAAGCTTCAGATGAGAAGGGCTGCGATGAGGACAGTGATGATGTGGAGGGGTCTCAAGAGGAGACCATGAAATCTGAGAAGGAATCTGACGaCAACCCAAGAGCAGATGATACAGATTTGCCACAAAGCGATTTGGAGGACTTGGACCTGACCGAGTCAGACAGCTCCGAGTGTGAACCCAAAGCATCGTTCAGCAGGAGCACTCGCTCAAGCTCACATGACTGCGTAGATCAGCGCTTCAGAGAGCCTCTCTTACACATCTCTCTTCCAGAGACTTCGGTGAAGTACGACGGTTTCAGCAAAGCCTGCTTAGGATCGACGGCCGAAAGCAGCCAATCCTCAAAGACTTTCTACCCTCATCAGGAAGCACAGACGCCCGAGACCAAGCCCAAAATCTGGTCACTCGCACAGACTGCCACCTCGCTAAACGACGCCGACTACCCGTCATGCATGCACAAAGGTCAGAGCATGAGGTCGTCCTCGGCAGAATGCCATTTAGACTCAGACCTGGCAGAAAGCCAACAAGACTCTCCGGTGTCCAGTCTGAGGAACTGGATCGATGGCGTCTTCCACGATCCCTTGTATCCACAGAGCAACTTGAACCAGACGTTCTCCGGAGCTTCTGGATTATGGACGGGCTCCCCCAGCTGCCCGGCGTCAGAGAACACTTTCCACGGACTGCAAGAGCCTGTTACACCCAGCCAGCTTACATAATCAACAGTGGAATAGGCTTAAAAGACAGACTCCTTAATGTAAACGAAAAAAGGGAGCGATTCTTTGGAGCGACACCATATAAGAGAACCACCTATGGACTGTTTTCTAGAAAACGGTGGTAAAGaaagtgtgaagaacctttttaaATTGGCCATATCACGGAATcacagaaatgtaaaatataaaatgaaatgtaaaccccttttttattattttaatatctttaatgTAGTATGTAAACCTTAtcagattattatttattgcccAGCCTGTACAGTCTATGGATGGAAATAGGCAGCAAGGAAAAAGGCCATGGTTTATGTGAAGTCACAAAAAACACTGTACTGGCATATAGTTATCCCCTTTTCTTAGCATACACCAATTTAGTCCTGCCTTTTTATGACCATATACAAATTAtaaggagtgtttttttttcaaactagGCCAAATAAAGGGCACTCATGTAAGAATAAGAAATACAAGATTGGTGTCCTAGACAGAAATTAAACCTAGCCCTAGATTAAATATCCATTTGAAAGTcggtgtagtccaagactagacttaatccctgtctgggaaactgttCTAAAGTGTTTAATTACAAGAAATATGGAGAAGCAGGGGATTGGTTGGTCACATAAACATGATTAATGGTTGTTGTACAAACAGCTTAAGTTGATGGACTAAAGGAATATTGAGGATATAGGTATAAAAACTCTATAGGCAAATTGACAGACAGGGATTCAGCCTAGTCTTTGGATACACAACATTTTGAAAGGAGATTTACCATCGAaggtaaaaatatgtaaagtcTATGACTATGCTTAATCCTTGTCTGAGAAACCCTAAATTACCAATTTAACGTAAACACTAGGAACTGTTAAGCATTATTATTCCCAAGgcactgttttgttttattttatatagatattACAGATAAATCTGAAACACCACTATGCTAAAATACCAGAACTGGGGCTTTTGTTGTCTGCAGTGCCATCTATTTACTTTTACTACAGTAATTGTAACTGATTTTGCTGCAggtgtttatttaacattgagGTGTTTGCTGTGGTACTTTTTGGGGTAAATCTGGGGTAACAGCACAGTGGAAATGTAGGTTTTAACCCCACAAAATGTCTTGCCAGTGTTCACTACTGTATGATAGCACGCCGCACAGATATGCCaaactaatttattatttatcacaCCAAAATAAAGGGTTGCTTTGTGAA

Function

symbol description
irx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell development; neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within heart development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-4

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249436.3 True 2654 mRNA 0.45 5 20249200 20254780

Neighbor

gene id symbol gene type direction distance location
LOC103022559 LOC108433845 coding upstream 93730 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 106295 20137795 ~ 20142905 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding upstream 568054 19675126 ~ 19681146 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding upstream 577984 19660446 ~ 19671216 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 589907 19639667 ~ 19659293 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding downstream 21851 20276631 ~ 20313981 (+)
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding downstream 1075225 21330005 ~ 21351097 (+)
LOC107197622 LOC107197622 coding downstream 1096782 21351562 ~ 21356335 (+)
otud6b otud6b,LOC107556329 coding downstream 1135358 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 1146709 21401489 ~ 21406189 (+)
G198727 NA non-coding upstream 26913 20222046 ~ 20222287 (+)
LOC111195527 NA non-coding upstream 76393 20171956 ~ 20172807 (+)
G198664 NA non-coding upstream 266950 19981683 ~ 19982250 (+)
G198661 NA non-coding upstream 273143 19975753 ~ 19976057 (+)
G198658 NA non-coding upstream 292614 19956342 ~ 19956586 (+)
G198730 ndufs6 non-coding downstream 13909 20268689 ~ 20271980 (+)
G198754 NA non-coding downstream 89139 20343919 ~ 20344324 (+)
G198755 NA non-coding downstream 92531 20347311 ~ 20347588 (+)
G198767 NA non-coding downstream 330944 20585724 ~ 20586099 (+)
G198777 NA non-coding downstream 464098 20718878 ~ 20719619 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 160213 20053028 ~ 20088987 (+)
G198540 NA other upstream 1001804 19246972 ~ 19247396 (+)
G198535 NA other upstream 1043542 19205077 ~ 19205658 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other upstream 1066722 19166346 ~ 19182478 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other upstream 1132898 19104407 ~ 19116302 (+)
mrpl36 mrpl36 other downstream 18241 20273021 ~ 20274854 (+)
G198815 NA other downstream 547591 20802371 ~ 20802890 (+)
LOC103037930 NA other downstream 1103684 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 1964485 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 2575451 22830231 ~ 22869257 (+)

Expression


Co-expression Network