psmg2 (psmg2)


Basic Information

Item Value
gene id psmg2
gene name psmg2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11813225 ~ 11821844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254674.3
ACCGATTTCCGTAGTGCGCAGTGTGTGGATCAGCGATTCTGCGCCGTGAATGTGAAACTAACAGTGCTGCACGTTCATTCAGATTTCCTGTGCAGATTTCCCCTCAGTTTATCAGTAAACAGTAACTACTCAATAGTTTATGAGATAAAGCTAACTATGTTTGTGTCTAGTGAAGACTCGACTCCCTCTTTTAAGggatttactttaatcctgCCCGCTGTTTCTGTGGGAAATGTGGGTCAGCTGGCGGCAGACCTGATCATCTCCACGCTGAACATGCCGAGGGTGGGACACTTTCACACCGACTGCCTGGTCCCCATGGCGGGCAACAACCCGtacagcggcggcggcggctcGGGGGGAGGAGCGGAGCAGCTCAGCACTAATGCAGAAGtaTACTCACACAGTGATCTGAGGTTAGCTGTACTTCAGATTCGGACCCCAGTCCTACAGACAAAAGTAAaatcattccggaagctgttgGTGTCCTGGATTAAAAGCAGTGGATTCTCGAGAACTGTGCTGCTATCTAGCAGCCATGCTCACCACAGAGACGATCAGCAGCTCCATGGAACCGCCCTGCGGTACCTGCTGAGTCCAGCACTGCAGGATGCAGAGAAGAGTCTAAAGGAACTGGGCTGGACTGAGCTGGAGAGAGTGTGTGCTTTTCCTGGCATAAATGACTCTGAAAAGCGACTGTACATCCCCGGAGGAGGAGTGACCAAAGGCCTATACACTGACTGTTGTACAGAGTGTGTCCCACTGGCTGTGGTACTTCTGTTCTGCTCAGAGGGAGATAACGTCCCAGACACTTTCACACTGACTAACCATCTAAACGACTGGCTCCACCTGCTGGAAAAAACTcctcaGGGTTCCACACCATGGAGGGTTCCTTCATCCTGGAGGCTGCTGTTTGGAAGTGGCATCCCACCCCTGCTCTTCTGAAGACCATGAAAACAGGAAACTGGACTGTTAGAAATGTCAGCAGCATGTTGGAGTTCAAGATTTTGCCCCcctacaaaataaaattaagattaTAAACATCCAGTTCTTATAAATGAGGGACCGGGGGCAGGCAGATTGCCACTGCAAGAAATCTGGTTTCTCTTTGTAAGAGAAGCAAACTaaatttaacagatttaaaagaCTATTTTTGTTGGTACATTTATCATGAAATGCTTTCAcactttaaagcatttttagataaataaaaatgtaatacagaaattaaatacagaaacagtTTGAGGTTTTAATATGACGATAACATAAATACATGGAGTGGAATATCTGCCAAATGTTAAATGATGGAGGTATTTGTACTGTATAATGGtttaatatgattaaatattatgttggTTTTGACTTTCTGGCAGTGGTTTGAGATCTCAGTTCCGCTGCCAGCACATGCTGTTCCAAAgatatactgattttttttttctattttgcttttctttctcttcccaTTTGGCTCTGTGCCCCTGTTTCCCAGCAGAGGCATGGTTATGGTTGTTGTGTGTCACAGCCTGACCTGCTGCAACAAGAACAAATCCAATTGACGCAAATGCGGtaggaaacaaaacaaaaactgtagTTTCTTCCTTCTTAAGGATGAAGCAGTGGTCTTGTTTTCGATGCTAAACCTCAGAATTGTGCGTCAGAGGCCGAAGGAAGCGCTAAAAATATAACCCTAACCCATTTCACATAAAAAATTATAGACACAACATGAAAAACTTTGCATTGTCTACTTCTACATTGTCTAATATGTAGTGCATCTTTTGCTATTAAACCCCATTCAACACAGAACCTCTGTTGATACTCTTTGGGGCTGTGCCGTGACCATCGTAGAGTGTAAGACACATAGTTTAGAAGGTAACACTCATTACTGTCATTGCTAGATTCAAATCAAAGTGGGTCCACCATCCATAAAACATGCAGCCAAGAGTGATGCTTTGGTCAGAAACTGACCATGTCCAGGTCCGggggtacctccctgaaattaatttttgcaacttgggatgtctgaaaaTCTGAAACCCAATGAGGTTGGGCAAGAGGCTTGCATGGAATCATAATTGAACTCTCTATGAGTGAGTGAGGTAGATAGAATGCTGCACAGTggtaaagcagtgtaaaaggGGGTGAAATTTGCCCAGAACTGTTAAATACTCTAAACATTGAGTatctcacttgctctctctggctggCACAACTCTTTAGTGTCGCATGAATATTTCAAACAGTTTTTAAGAAAGGGGCTCAGAAAGTGAGCAAATTTCTGAGGAATAACATTACATAGAAAATGTGATATTGCTGTTAGATAACCCAAAAGATATCCAGATATGTCTTCAAAGGTTTCCTGGCACTTGGCCTGGCTGCACTAATTTGTCCCAGAATAAAAAGTAGTTTGGTATGTGTTCA

Function

symbol description
psmg2 Predicted to be involved in chaperone-mediated protein complex assembly and proteasome assembly. Predicted to be active in cytosol and nucleus. Orthologous to human PSMG2 (proteasome assembly chaperone 2).

NR:

description
proteasome assembly chaperone 2 isoform X1

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11876 PSMG2, PAC2; proteasome assembly chaperone 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254674.3 True 2421 mRNA 0.43 7 11813225 11821844

Neighbor

gene id symbol gene type direction distance location
LOC111195553 NA coding upstream 130752 11678931 ~ 11682473 (+)
LOC103022883 LOC108438857 coding upstream 235316 11556072 ~ 11577909 (+)
adck5 adck5 coding upstream 330834 11450126 ~ 11482391 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding upstream 365748 11434179 ~ 11447477 (+)
prcc prcc coding upstream 386566 11419729 ~ 11426659 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 30167 11852011 ~ 11862695 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding downstream 52097 11873941 ~ 11991483 (+)
rnmt rnmt coding downstream 182982 12004826 ~ 12019861 (+)
LOC103026238 LOC108410890 coding downstream 713587 12535431 ~ 12615182 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 882010 12703854 ~ 12708168 (+)
G196964 NA non-coding upstream 61510 11750741 ~ 11751715 (+)
G196965 NA non-coding upstream 62722 11749118 ~ 11750503 (+)
G196955 NA non-coding upstream 111544 11699598 ~ 11701681 (+)
G196956 ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323 non-coding upstream 128681 11663050 ~ 11684544 (+)
G196939 LOC107738317 non-coding upstream 160350 11626382 ~ 11652875 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding downstream 1359 11823203 ~ 11850741 (+)
G196981 NA non-coding downstream 52118 11873962 ~ 11929251 (+)
LOC111195509 NA non-coding downstream 105992 11927836 ~ 11929113 (+)
G196984 NA non-coding downstream 117535 11939379 ~ 11959950 (+)
G196986 NA non-coding downstream 171338 11993182 ~ 11994321 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 66990 11687399 ~ 11746235 (+)
polr2k NA other upstream 258642 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 395522 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 781956 11011041 ~ 11031269 (+)
G196633 NA other upstream 1321124 10491546 ~ 10492101 (+)
G197106 NA other downstream 893524 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1067514 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1134826 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1502542 13324386 ~ 13362658 (+)
rpa3 NA other downstream 2454947 14276791 ~ 14293068 (+)

Expression


Co-expression Network