seh1l (seh1l,LOC107668717,LOC107746927)


Basic Information

Item Value
gene id seh1l
gene name seh1l,LOC107668717,LOC107746927
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11852011 ~ 11862695 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254676.3
gaGTCTAGATTGTGGAGTTCAGACCGAGGCGCTGTCGGGCTGCTGTTGCTCCTCCAGTCCTACTGCTCTGAGAGCGGCGCTGCTGAGTCTCTGACTGGCAGGAAACAGCAGTGAGCGGTAAAATGGCGCATTGCTGAGCGACCCGCCAGAAGTGAgcagaaacattaaaaagtttaaagcGGTGTTCTGTATTTACTCTGTTTCTGAGAGCGAACAGGGATTCAGTGTTTTCACAGCGATCAGGAACGGAGAGTAGAGGAGCATGTTTGTGGCGCGAAGCATCGCTGCAGATCACAAAGATCTGATCCACGATGTTTCCTATGATTTCCACGGCAGGAGGATGGCGACCTGCTCCAGCGACCAGAGCGTGAAGGTTTGGGACAAAAGTGACGATGGAGAATGGCATTGCACAGCCAGTTGGAAGACCCACAGTGGCTCAGTGTGGAGAGTGACGTGGGCTCACCCAGAGTTCGGACAGGTGCTGGCGTCCTGCTCTTTTGACCGCACCGCAGCAGTGTGGGAAGAAATAGTCGGCGAATCCAACGACAAACAGCGAGGACTTAGTCACTGGATCAAGAGAACAACTTTGGTGGACAGCAGGACTTCAGTAACAGATGTGAAGTTTGCACCAAAGCACATGGGCCTGGTGCTGGCCACTTGCTCTGCAGATGGAGTGGTGCGCATTTATGAAGCTCCAGACGTGATGAACCTTAGTCAGTGGAGTCTGCAGCACGAGATATCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTccagCTCCCGTGCTCATCCTCCTATGATCGCTGTGGGTAGTGATGACAACAATGTGACCTACAGTGGAAAAGTACAGATCTATGAATACAATGAAAATACCAGGAAGTACACCAAAGCAGAGACGTTAATGACCGTTACAGATCCTGTTCATGACATTGCTTTCGCTCCTAATCTCGGGAGGTCTTTCCATGTGCTTGCCATAGCAACCAAAGATGTCCGCATTTTCAAGCTTATACCTCTCCGGAGAGAAAGTACCACAAGCTCTGGACCAACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGCCATAACTCTCAGGTGTGGCGCGTCAGCTGGAACATTACCAGTACCCTACTGGCCTCCTCCGGGGATGATGGCTGTGTTCGCCTATGGAAGGCTAATTACATGGACAACTGGAAGTGTACAGGGATCCTGCGGGGTGATGGCAGCCCAGTGAATGGCTCCTCAGTTCAGGGTGCGGCTCTCGGTGCTGTGGGGTCTGGTGGAGCACAGACACAGAATAGTGTGGTGGGAGCAGCTTCTGCCGGCAGAAAGAAAGCTCAACTGATGCCAGGCTAACAGTGACCGGGTGCTTGCTGCATGTACATAcaccccttacacacacacacagttgtgaTTGCATACAGGATTTGAAAAGATCTTCCTTCTGATGCCTACACAGACAATCCACAATCCTCCAGCTACTAATCCAAGGGTGTGTGGCAGTATGCGTTTGGTGTGTGAAAACTGCAACTGAAATAACTTCAGAAGTACtgattgtgtgttgtgtttggtggcacttacttttttttttgtgaaacagTTTTTGATGTTATACTGGTGGTCTTTGGATCTGCTGAGTGTGATGTATATTGTTATGTTCTATTCCTCTCATGTCAGAATAGTTGAGAAATGAATTAAAGGTGAATTAAGCACAGGTATTTTTTCTAAGCCTAATGCCATTAGTAAATGGCTGTTCCATTTGATTCCATTTCAAACTAAATCATGATTgtttgaccaatagaaatgatccaaaatgaataaaagccCTCATTTTTCTCTATTCGCAAGAAGTTACTGTTTTAGTGGTTGAAGGTTTTGTCACAGGACTgtataagttttatttttaggacTGAAGACACTCCGAATAGTctaaaacacactaaacacaaaaatacatgcCTCATTTTGTACCTGTTCAAGGTGTTAATGGTGTTAATGTAATATGTTCCACTCCAGATTTATACACTTGCAAAGCCAGCTGTattctaataatattaaattgcTGATATGGTGCTGCTGTGGAACAGTTTTATGTTCAAATAAaaactgctaatgctgctaataaaaataaaagaaggaaggaaaaCAAATAGTCACCAGTTATCCACACTTAGCATTGCATTCCATTAATTGTTAGCCACGTTAGCacgtttttgtttagtttattgcTTAATTCTTTGATGGGGAAACTGGGAATTAGATGGTCTGATATGAAGCAACTAATGCCTTACTTAAACTGTACTAattctgtgtgagtgtgagaataTAACCTGCATTCCTCAAAGAGTGTGTTCTGCTGTTCCACAGTGTTAACAGCAGAGGGGGGCAGTTAGctgaactaactaactaacaagaGAGACATTATAAATTCAGTAGTCTAGATGGGTTTTAGCTTAACTGCTAAAACGTTTCTCTGGATTATGTGAAGGTTCACTAGAAATACAGTTTACAATTTTccaatttttacagttttacaagtGTCGTCAGTCACCCGAAATATGTTTGTTGTTTAAAGttcactttttctgtttttagcattGAGGCTACAAGGCTAATTGCTATAATGAGCCTTTCCAACAAATAACTTTAGCAGCagcttttttatacataaaaaaaaaataaaatatacaatgtaaGAACTTTCGATATTCAAGAAAATAAGCAGTTACTTCCAAAAGGAAGAATAGGttgatttatgtttatttgttggaAGGGCTCAAATATCACGGTCAAGGTATCACAATTTTACCTTTAGTATTCTCTGAGATATTAATGGTAAAATATTGTACTATCCTTCTAGTTCCTGCGattcctgtttttttgggttttttttttttttgcttaaacaCATATTGTGCTGTGATTGGAAAATACGCATTATGAGCTACAACTGCCTTATAGCTCCACTATAGATGTACAGACTGTAGACCAACTGTAGTTCAACTGTTGATGCACAATGTATTCATCATTGGCGAGTCTCTGGTGACCGCTGTTGtccaaatattattgaggtggTGAATCATTTTCAGAACATTAGTGATAAAATAGCCAGTAAAGGTAGAAACTGACCACTGATGAAGAAATAGGAAATTGGTGTGCAGCTAACACAAACTGAATCAAGTTAGGCTACATGTCGGCAAACTAATGCTACTAGAGAAGTGTTTCTCATGAGGTGACCAGTGCTGGTACCTCACACCTCATTAGaagttagagttgaatgtaatCTGCAGGTTAACATCTATGATGGCCCAAGGCGGAGCTAAAAATTCTTATGGACATTTATTTTGTCTTGGTTTCATcaagtttaaaaacaacacagtgTTTCTGTACATTTACGTTTCAGCACGTCTGGGTGATTTGTAtgtgtgaaataaagtttattacacAGCA
>XM_015607239.2
agaGTCTAGATTGTGGAGTTCAGACCGAGGCGCTGTCGGGCTGCTGTTGCTCCTCCAGTCCTACTGCTCTGAGAGCGGCGCTGCTGAGTCTCTGACTGGCAGGAAACAGCAGTGAGCGGTAAAATGGCGCATTGCTGAGCGACCCGCCAGAAGTGAgcagaaacattaaaaagtttaaagcGGTGTTCTGTATTTACTCTGTTTCTGAGAGCGAACAGGGATTCAGTGTTTTCACAGCGATCAGGAACGGAGAGTAGAGGAGCATGTTTGTGGCGCGAAGCATCGCTGCAGATCACAAAGATCTGATCCACGATGTTTCCTATGATTTCCACGGCAGGAGGATGGCGACCTGCTCCAGCGACCAGAGCGTGAAGGTTTGGGACAAAAGTGACGATGGAGAATGGCATTGCACAGCCAGTTGGAAGACCCACAGTGGCTCAGTGTGGAGAGTGACGTGGGCTCACCCAGAGTTCGGACAGGTGCTGGCGTCCTGCTCTTTTGACCGCACCGCAGCAGTGTGGGAAGAAATAGTCGGCGAATCCAACGACAAACAGCGAGGACTTAGTCACTGGATCAAGAGAACAACTTTGGTGGACAGCAGGACTTCAGTAACAGATGTGAAGTTTGCACCAAAGCACATGGGCCTGGTGCTGGCCACTTGCTCTGCAGATGGAGTGGTGCGCATTTATGAAGCTCCAGACGTGATGAACCTTAGTCAGTGGAGTCTGCAGCACGAGATATCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTccagCTCCCGTGCTCATCCTCCTATGATCGCTGTGGGTAGTGATGACAACAATGTGACCTACAGTGGAAAAGTACAGATCTATGAATACAATGAAAATACCAGGAAGTACACCAAAGCAGAGACGTTAATGACCGTTACAGATCCTGTTCATGACATTGCTTTCGCTCCTAATCTCGGGAGGTCTTTCCATGTGCTTGCCATAGCAACCAAAGATGTCCGCATTTTCAAGCTTATACCTCTCCGGAGAGAAAGTACCACAAGCTCTGGACCAACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGCCATAACTCTCAGGTGTGGCGCGTCAGCTGGAACATTACCAGTACCCTACTGGCCTCCTCCGGGGATGATGGCTGTGTTCGCCTATGGAAGGCTAATTACATGGACAACTGGAAGTGTACAGGGATCCTGCGGGGTGATGGCAGCCCAGTGAATGGCTCCTCAGTTCAGGGTGCGGCTCTCGGTGCTGTGGGGTCTGGTGGAGCACAGACACAGAATAGTGTGGTGGGAGCAGCTTCTGCCGGCAGatatttTTTCCCACATCTGGATCCCCCTCGAGCTGGATCCAGACTGGCCCTCCTACTGCCCCCTCCCTCACTGATTGAGCAGATCTTTGAAACTGatcacacacaccaacaccaaccaccacagatacgcCACCGATACACACCCACTCAACCCATACAGCCTGCAGAGCAcgactgaccacacacacacacactctttatcctcaagtcattttttgttttcttaaatcAGCATTTTGCTGAATTTCTCTCCTAATTGAAAATTTCCTTCTGCCATAAATGTCATGGATTTTGGAATATCAGGTAAAATCAGACATAAATGTTACAGTTCTGGAATGATAAAGGCATTTTTTGTACTAGATTTTATGTAACAAAGTAAAGTTTCAGTTCCTctgtattaataaaaacactgctggaagtgta

Function

symbol description
seh1l Predicted to enable structural molecule activity. Predicted to be involved in several processes, including attachment of mitotic spindle microtubules to kinetochore; cellular response to amino acid starvation; and positive regulation of TORC1 signaling. Predicted to act upstream of or within several processes, including chromosome segregation; mRNA transport; and protein transport. Predicted to be located in lysosomal membrane. Predicted to be part of Seh1-associated complex and nuclear pore outer ring. Predicted to colocalize with kinetochore. Orthologous to human SEH1L (SEH1 like nucleoporin).

NR:

description
nucleoporin seh1

GO:

id name namespace
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031080 nuclear pore outer ring cellular_component

KEGG:

id description
K14299 SEH1; nucleoporin SEH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254676.3 True 3457 mRNA 0.42 9 11852012 11861054
XM_015607239.2 False 1759 mRNA 0.50 9 11852011 11862695

Neighbor

gene id symbol gene type direction distance location
psmg2 psmg2 coding upstream 30167 11813225 ~ 11821844 (+)
LOC111195553 NA coding upstream 169538 11678931 ~ 11682473 (+)
LOC103022883 LOC108438857 coding upstream 274102 11556072 ~ 11577909 (+)
adck5 adck5 coding upstream 369620 11450126 ~ 11482391 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding upstream 404534 11434179 ~ 11447477 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding downstream 11246 11873941 ~ 11991483 (+)
rnmt rnmt coding downstream 142131 12004826 ~ 12019861 (+)
LOC103026238 LOC108410890 coding downstream 672736 12535431 ~ 12615182 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 841159 12703854 ~ 12708168 (+)
LOC111195554 NA coding downstream 921483 12784178 ~ 12788778 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding upstream 1270 11823203 ~ 11850741 (+)
G196964 NA non-coding upstream 100296 11750741 ~ 11751715 (+)
G196965 NA non-coding upstream 101508 11749118 ~ 11750503 (+)
G196955 NA non-coding upstream 150330 11699598 ~ 11701681 (+)
G196956 ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323 non-coding upstream 167467 11663050 ~ 11684544 (+)
G196981 NA non-coding downstream 11267 11873962 ~ 11929251 (+)
LOC111195509 NA non-coding downstream 65141 11927836 ~ 11929113 (+)
G196984 NA non-coding downstream 76684 11939379 ~ 11959950 (+)
G196986 NA non-coding downstream 130487 11993182 ~ 11994321 (+)
G197090 NA non-coding downstream 759314 12622009 ~ 12624605 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 105776 11687399 ~ 11746235 (+)
polr2k NA other upstream 297428 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 434308 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 820742 11011041 ~ 11031269 (+)
G196633 NA other upstream 1359910 10491546 ~ 10492101 (+)
G197106 NA other downstream 852673 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1026663 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1093975 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1461691 13324386 ~ 13362658 (+)
rpa3 NA other downstream 2414096 14276791 ~ 14293068 (+)

Expression


Co-expression Network