rnmt (rnmt)


Basic Information

Item Value
gene id rnmt
gene name rnmt
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12004826 ~ 12019861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254677.3
TGTGAGCGGCTGTGTTTCCTCTGGAGGGCCGGCAGGCGGCGGTGCTGAAGAGAAGCGGGACAGAGCGGAGAGAGAGCAGCCAGCGAGATGGCGGAAAACTCGAgCTATCCCACAGAAGAGCAGCAACCTGCACACACATCCTCCCTAAAGAGGAGACATGAGGAAGACTCTCCGGAGTTCGGATCTCCTCCTAAAAAACAGGACACAGGAGAGGGACACAGTCTGAAAGTGGCAAGTCATTACAACACCTTGCAGGAATGCGGCCTGGCAGAGCGCAGCAGAAGCCGGATCGTCCACTTGCGCAACTTCAACAACTGGACGAAGAGTATCCTCATTGGAGAGATCTTGGATAAGGTGAGGCGTGAGCGGAGGGACGTGGCAGTGCTGGATTTGGGCTGTGGTAAAGGAGGAGACCTGCTGAAGTGGAGGAAAGGACGCATCAGCAAGTTAGTGTGTGCAGATATCGCCGATGTGTCGGTGGAACAGTGTCGGCAGCGCTATGATGACATGAGGAGGAGGAGTCACCCTAACGAACGAATCTTCAGTGCTGAGTTCATCACTGCAGATTGCAGCAggGAGCTGCTGAGTGATAAACTGAGTGATGCAGAGTTGAAGTTTGATATCTGTAGCTGTCAGTTCGTGTATCATTACTCATTTGAAAGTCACAGTCAGGCAGACACCATGCTGAGAAACGCCTGTGAGAGACTGCGGCCAGGAGGATTCTTCATAGGAACCACGCCAGACTCCTACGAGCTagtAAAGCGTCTAGAAGCATCTGATTCGAACAGCTTTGGGAATGAAGTGTACAGGGTAACGTTTCGGAAGAAAGGAGAATACCCGCTGTTTGGCTGTCAGTATGAGTTCAACCTGGAGGGAGTCGTTGACGTACCAGAGTTCTTAGTCTATTTCCCTCTGCTTGTAGAAATGGCGAAGAAGTACAACATGCGGTTGGTGTTTAAGAAGACATTCCGGGAGTTCTTTCAAGACAAGATAAAGGACGAGCAGAATAGGATTCTGTTGCAGAGGATGCAGGGgctagagcaATACCCAGCAGATGGCAGAGGCAGGCTAGCGTCTGATAACCCAGTGGAGTACCACCATGCTGAGAGGATAGCCAAGACCCCCGGAGTTAGACTGCCACTGGGCACGATGTCCAAGTCTGAGTGGGAGGCTACAAGTATCTATCTGGTGTTCGTTTTTGAGAAGATGTCCTGAACTGGAGAGTTTTAAAACTGGAGATGTCTGCAGCATCTATTcaattctcttttctttttctttgcttGTAAAGAGCCAGTCgagtcttctttttttttggtctgaaaCGGAGCATCTGTGTGTTTATCAGAGAGAATGTAAAGTAAATGAGTGTCTATGACCAATTATGATTTTCATCTAAAACTTTGAGCAGTGAGTCTGTTGGTCATTCATGATATATTTGTATGTTGCATGGGGAAAAATTATTGTAGCCGACTTGATGTTGGAATTTAGTCTATGTTTGTAGGTGACAGTAGCCGTATCCGGATGAGATTAGTTTCTAGAGGGAAAAATATTTTGCATTTCAATGCAGTGATAAAACTCagtgagttgttttttttttttttttttttggctttctcagtcacgacatcatgttcagtagctcctccacttccactcgctgttgtgtttatgtggatctccatggaaacatgCACTGTTTAATTGCGGTGCGTAGCAGTgcacaaatagctattttattaaatgtgaggtgatgaaactcgGAGATGTGCGTCCGAACATAACTAAAATTTccagaggaccacagagttcagcgaaaaacagtagggcCTGCAATTCTGCCTGTAATTTTCCCAGAGGACGTCgaagaaaaacacgtacatgttTGTTTTGGACAGCAATAAAatcatggagaaaaaaaaaaaattaggcccccctgagaaactaatcccctctgaaaaaaaaaaaaaacacgtaagCAAGTCTTCAAAGAGCCTAAGGCTGATTGGAGGTAAATTGAGCAGTTTATTTTGGTCACTTGTGGGGTAAGACCAAtttgaga

Function

symbol description
rnmt Predicted to enable RNA binding activity and mRNA (guanine-N7-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be part of mRNA cap binding activity complex. Predicted to be active in nucleus. Orthologous to human RNMT (RNA guanine-7 methyltransferase).

NR:

description
mRNA cap guanine-N7 methyltransferase

GO:

id name namespace
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0080009 mRNA methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00565 RNMT; mRNA (guanine-N7-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254677.3 True 2059 mRNA 0.46 11 12004826 12019861

Neighbor

gene id symbol gene type direction distance location
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 13343 11873941 ~ 11991483 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 142131 11852011 ~ 11862695 (+)
psmg2 psmg2 coding upstream 182982 11813225 ~ 11821844 (+)
LOC111195553 NA coding upstream 322353 11678931 ~ 11682473 (+)
LOC103022883 LOC108438857 coding upstream 426917 11556072 ~ 11577909 (+)
LOC103026238 LOC108410890 coding downstream 515570 12535431 ~ 12615182 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 683993 12703854 ~ 12708168 (+)
LOC111195554 NA coding downstream 764317 12784178 ~ 12788778 (+)
LOC107197759 NA coding downstream 873358 12893219 ~ 12896452 (+)
LOC103028905 NA coding downstream 878866 12898727 ~ 12904626 (+)
G196986 NA non-coding upstream 10505 11993182 ~ 11994321 (+)
G196984 NA non-coding upstream 44876 11939379 ~ 11959950 (+)
G196981 NA non-coding upstream 75575 11873962 ~ 11929251 (+)
LOC111195509 NA non-coding upstream 75713 11927836 ~ 11929113 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding upstream 154085 11823203 ~ 11850741 (+)
G197090 NA non-coding downstream 602148 12622009 ~ 12624605 (+)
G197097 NA non-coding downstream 620917 12640778 ~ 12641014 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding downstream 642190 12662051 ~ 12693905 (+)
G197174 NA non-coding downstream 865341 12885202 ~ 12885485 (+)
G197175 NA non-coding downstream 865762 12885623 ~ 12886011 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 258591 11687399 ~ 11746235 (+)
polr2k NA other upstream 450243 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 587123 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 973557 11011041 ~ 11031269 (+)
G196633 NA other upstream 1512725 10491546 ~ 10492101 (+)
G197106 NA other downstream 695507 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 869497 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 936809 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1304525 13324386 ~ 13362658 (+)
rpa3 NA other downstream 2256930 14276791 ~ 14293068 (+)

Expression


Co-expression Network