LOC103026839 (txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569)


Basic Information

Item Value
gene id LOC103026839
gene name txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12703854 ~ 12708168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254699.3
TCACAGCTACACGAGTATCAGTGGCAGCGGGAGCGTGTAAATGTTGAGTTTGTGAGATAAAAGAACAGCACTTGTGATTGTGTAGGTGAATTAGCCTAGCTTCACACTACGAGGCTGCATTAAGCTCTTATTTAGATGCAGCAGTGAGATAGGAGGCTTTTCAGCTTCGCAAAAGCAGAAAACAGGTGCTTGTTTTTGAGCCTTTTTTTCTTGGAGATAAGGACAGAAAAGGTCTGAAGATGGTGGCGATGACCAAGAGAATGAAGGTCTTCGAGATCGCCTTCAACGATCCGTCCAAGACCTTCTacagcagtggagataaagtggcCGGGAAGGTGCTGGTGGAGGTGGCCGAGGTGACCCGGGTGCTGGCAATGAAAGTGCTGGGCATCGGCTGTGCCAAGGTGGAATATGCCAAGGGAAAGCAGAGGTGCAGGGAGGAGATTGACTACCTGAAGTACGAGGAGGTGGTCCACCTGGATGATCAGCCTGCAGATACTGATGGCTCAGTCATCCTCCGTCCTGGGAACAAATATGAATACTCCTTCGGCTTTGAGCTTCCACCTGGGCAACTGGTGTCCTCATACAAAGGCAAGTTTGGATATGTGCAGTACTACGTGAAGGCCCTGATGGAGAGGCCCTCTCAGCCTGCCCTGGAGTGCAAGAAGCACTTTGAGGTGGAGGAACCGATCGATGTGAACACCCCAGACCTCCTGTCTCCAACAGGTGGTATGAAGGAGAAGAAAGTCACCTGCATGTTCATTCCTGATGGCCAAGTTTCCCTGAATGCCAAGATTGACAGAAGGGGCTTCTGTGAAGGCGAGGACATCTGCATTGACGCAAAGTTCGAGAACACCTGCTCAAGGATTGTGGTGCCTAAAGCCGCCATTGTGGCCAAGCACACATACCAGGCCACTGGACGCACCAAGGTCTTCCGGCAGAAGCTGTCCTCAGTTCGGGGCAATCACATCATCTCGGGCATGTGCGATGCTTGGCAGGGGAAGACCATCCGTGTGCCCAAGATCAAACCATCCATGCTTGGCTGCAACATCATCCGTGTGGAGTATGCTCTCATGATCTACATGCACATCCCAGGCAGTGATAAGCTGATACTGGAGCTTCCACTTGTCATCGGTACCGTGCCCTACAACGGCTTCGGCAGTCGAACAAACAGCGTGAGCAGCCAGGAGGGTTCAGTCAGCACATCTTCGGCCAGCTGGGTGTCCTTGCGTATGCCGTCCTCTGCTCCTCCAAGCTACTGCGACGTGACCCGTGACTGCAGGCTTGACCAGCCTCTCACACCCCTGCTGGATGACTACGATGGTGGGGACAGTCCTATCTTCATGAACGCTCCACACTTCCAGTTCCCTCCCCTCCCTGCTtactcagagGTGGAGGAAGAATACAACGGCAATGCTCGTATGCTTCCAGTGTGTTGAGGAGCTCTGCACCTCCATGACTGAAGCCCATTAATTAACTGGCCCGTTTCTACTCTTGGCTCTTAAATATTTCaccattcagaaactgaaatgtgaGCTGTTGAGAGGTCTTCTCAGGGCTGAGGAATACCCTTAGGTCCAAAGAAAGGCAAAGTTCGGAGAAAGAGGGTCCGCAGTCGCAGGTTTCCTGGGTGTGCTGTTGGTGGCCATCTTGCAAGTCTTTCTGGGTGCGATGTGGGACTGCTTTCATTTCACGACTTGATGGAGCACATGCACTCTTTCGcccacacattttacacactgtCGATGTGTATGAGCTGCTTCCTGCTGAGACATGAAGTGGACTGTTGCGTATCATAGCCATATAGTCACTCCAAGACTCCCCTCCAACATGGAGGAAGCACTTTTCCAAAAGTTTCCAGCATATTACTGATTAGCTTCTAGCCTTTTTGGCTGACTTTTATTTGTTACTAATCATTCCATTAGAAGCCTCAGTTTGAGGATCGTTTGTAGAGGAACCATCTGTTAACATGCTGTAtcattcattttgttttgtattttgttgaaTTTGTAGAAGCAGGTAAACTTAGTCAGAGATGGAAATGGAATGGAAGGTCCGTGTGAGATACTGCATGTTTTTGCCTCAGGGTATGAAGGGAACGTCATGCAGAGTTAATTTATCTTTATCGATCAGTGTTTTATAATGCTGTTTCTTCTATAATGCACTTTCTTATGGATGCAACGTGACATGTAACTGCCTACAGGGACAGTTTCCTATGTTAAGCCTGTTTATGTTTCAACCCTAGTCTTCCAGTTCTTTTTCTCAGTGTAATATTTTGCAGCTGATATAAAGATCAAGCTTGGACCTTCCACTGTATTGCATTCAAAACCTCATGTTAATCAAGGGCTCCGTTCAAGTGCATCATCTATGTGAATGTGGGCTGCATTGGGGAGCCAACAGAGAATGTGACACTAAAAGTGCCAAAACAGTGGTGTATGTGGGCCCCAACGTCCTGTTCAACATCAGGATCTGCACTGTGCATAAATATTTTCAATGTGACTGTTTTCTT

Function

symbol description
txnipa Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; endocrine system; mesoderm; and nervous system. Orthologous to human TXNIP (thioredoxin interacting protein).
txnip Enables ubiquitin protein ligase binding activity. Involved in cellular response to tumor cell; keratinocyte differentiation; and negative regulation of cell division. Located in cytoplasm.

NR:

description
thioredoxin-interacting protein

GO: NA

KEGG:

id description
K20910 TXNIP; thioredoxin-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254699.3 True 2509 mRNA 0.48 6 12703854 12708168

Neighbor

gene id symbol gene type direction distance location
LOC103026238 LOC108410890 coding upstream 88672 12535431 ~ 12615182 (+)
rnmt rnmt coding upstream 683993 12004826 ~ 12019861 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 712371 11873941 ~ 11991483 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 841159 11852011 ~ 11862695 (+)
psmg2 psmg2 coding upstream 882010 11813225 ~ 11821844 (+)
LOC111195554 NA coding downstream 76010 12784178 ~ 12788778 (+)
LOC107197759 NA coding downstream 185051 12893219 ~ 12896452 (+)
LOC103028905 NA coding downstream 190559 12898727 ~ 12904626 (+)
LOC103030274 NA coding downstream 289421 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 320740 13028908 ~ 13030890 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding upstream 9949 12662051 ~ 12693905 (+)
G197097 NA non-coding upstream 62840 12640778 ~ 12641014 (+)
G197090 NA non-coding upstream 79249 12622009 ~ 12624605 (+)
G196986 NA non-coding upstream 709533 11993182 ~ 11994321 (+)
G196984 NA non-coding upstream 743904 11939379 ~ 11959950 (+)
G197174 NA non-coding downstream 177034 12885202 ~ 12885485 (+)
G197175 NA non-coding downstream 177455 12885623 ~ 12886011 (+)
G197188 NA non-coding downstream 220901 12929069 ~ 12929331 (+)
G197189 NA non-coding downstream 221241 12929409 ~ 12929695 (+)
G197190 NA non-coding downstream 222438 12930606 ~ 12930943 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 957619 11687399 ~ 11746235 (+)
polr2k NA other upstream 1149271 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1286151 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 1672585 11011041 ~ 11031269 (+)
G196633 NA other upstream 2211753 10491546 ~ 10492101 (+)
G197106 NA other downstream 7200 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 181190 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 248502 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 616218 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1568623 14276791 ~ 14293068 (+)

Expression


Co-expression Network