LOC103032168 (zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877)


Basic Information

Item Value
gene id LOC103032168
gene name zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13114501 ~ 13115971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254718.2
GGCTCAGAGCTCCCACTCATTGGGAGAATTCATCtcagactgacacacacactctacaaatGGTTGTTCAAGTGACTCCAAGGATTCGCCAGGGCAGCAAGTCAATGGAGGGCAGAGAGCAGAAGGTGGAGGCCAATGTTTTGCTTCTGGGAGCTGAGAATGTAGGGAAATCTGCACTAACAGTGCGTTTCCTGACGAGAAGATTCATTGGGGAATATGGTGATATAGAGTCAATCTACAGTCACTGTGATAAGATTGATGGTCGTGAGATTTGCTTCAACATCTGGGACTCACTTTGCCCACAGAACACCAAAAGCAATGACCCTGGATACATCACTGATCAACAGCTGGAGTGGACAGATGGTTTTATCTTGGTCTACAGCATCTGTGATAGAGCCAGCTTTAATGTAGTCCAGAAACAGGTTCAGTGGATCCGACAAGCCAAAGCTAAGATCTCGGCTCCCATCATCATTGTAGGAAACAAACGGGACCTCCAGCACAGACGGGCCGTGTCGAGCGAGGAAGGACGTCTACTGGCCCTCTCTGCAGACTGCGGCTTCTTTGAGATTTCTGCAGCTGAGACGTACCACGGCGTGTTGGTGGTGTTTCATGAACTTTTCGATCTTATTCGGGAGTCCAGGGTGCCTAAGAAAGGGGCTGCTGGATTCAAGGGCATCGTTAGAAGCATGTCTGCCGTGTTTGGGAGGAAACGGACTGAATAGACTAAAGACTTTTCTCAAGAGAAAATGccacactcttaaaaatgaatgtgCCAAAAAAGGTTCTGTGGAGAAATtccacaaaaaaa

Function

symbol description
zgc:64022 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; forebrain; hypochord; otic vesicle; and pronephric duct. Orthologous to human RERGL (RERG like).

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like protein

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254718.2 True 808 mRNA 0.48 4 13114501 13115971

Neighbor

gene id symbol gene type direction distance location
LOC103031854 NA coding upstream 2448 13099037 ~ 13112053 (+)
thap7 NA coding upstream 20006 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 26575 13085746 ~ 13087926 (+)
LOC111195512 NA coding upstream 41844 13070483 ~ 13072657 (+)
LOC111195511 NA coding upstream 71066 13041191 ~ 13043435 (+)
chtop chtop coding downstream 173743 13289714 ~ 13298879 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 185924 13301895 ~ 13319691 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 323521 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 338732 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 347328 13463299 ~ 13468103 (+)
G197230 NA non-coding upstream 809 13113491 ~ 13113692 (+)
G197227 NA non-coding upstream 17629 13096552 ~ 13096872 (+)
G197213 NA non-coding upstream 81211 13032083 ~ 13033290 (+)
G197206 NA non-coding upstream 117626 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 172217 12941852 ~ 12942284 (+)
G197308 NA non-coding downstream 25198 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 28012 13143983 ~ 13144700 (+)
G197305 NA non-coding downstream 46322 13162293 ~ 13187854 (+)
G197317 NA non-coding downstream 121489 13237460 ~ 13240173 (+)
G197325 snapin,LOC106569889 non-coding downstream 165711 13281682 ~ 13284517 (+)
s100a14 s100a14,LOC108442988 other upstream 150152 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 185974 12889358 ~ 12928527 (+)
G197106 NA other upstream 340005 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1368266 11687399 ~ 11746235 (+)
polr2k NA other upstream 1559918 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 208415 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1160820 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1350294 14466265 ~ 14468882 (+)
G197665 NA other downstream 1678449 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2645952 15761923 ~ 15789854 (+)

Expression


Co-expression Network