chtop (chtop)


Basic Information

Item Value
gene id chtop
gene name chtop
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13289714 ~ 13298879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254725.3
tctatctaacctTAACCTGTTAGCCGAAGCTGTGAATAAACCAACACTGGTCTCTCAGACTGACAAACTACAACTACTGgatcacaGAACAAACAAGCAAGCCTGAAGAAAAATGACTTCCCCCTCTTCACAAAAAGTCGTGCTGAAAAGCACCACCAAGGTGTCCCTGAATGAGCGCTTCACAAACATGATGAAGAACAAGCAGCCGACCCCCGTCAGCATCCGGGCCacaatgcagcagcagcacatggCCAGCGCGCGGAACCGACGACTCGCCCAGCAGATGGAGAACAGGCCCTCGGTGCAGGCCGCCCTGCAGCacaaacagAGTCTGAAGCAGCGACTGGGGAAGAGCAACATTCAGGCCAGGTTGGGTCGACCAGTCGGCTCATTGATGCGGGGCGGCCCAGCAGGCCGGGGCTTTGTCATGGGAGGAATGCGTGGAGCCGCACGAGGCCTGAGGGGACGAGGAAGAGGTGGCATAATGAGAGGAGCGCTGTCGCTTAGAGGTGTGGGCCAGCTGAAGGGCCGGGGTGGTCCTGGGCGTATTGGGCTTCGCAGAGGAATGCGCCAACGTGGAGGAGGCCCTGGTAGAGGAGCACTTCAGATTGGCCGTGGAGCTGGACGTGGAGCACCTGGACCTAGAGGACGTGGTGGCCTGCGGGGTCGTGGAGGTTTCGTTGCAAGGGGGCGCGGACGGGGCAGAGGAAGAGGAGCCGGTCGTCCTGTCGTTACAAGGGAGCAACTGGACAATCAGCTGGACGCCTACATGTCCAAGACCAAGGGCCACTTGGATGCTGAGCTGGATGCATATATGGCTCAAGCAGACCCTGAAAGTATGGAGTGATGACAGCAGTGCTCAGGGATGGAAGAGAACGAGAACAGGGCCCATATAAATCTGCAAATAAATAGACTGATATATTTTTGTCTGCCAACATTCAAGGCTACCCCTTCCCACCTTCCTTTCCTCTGAATGTTCAACATAAGGTTCCACAAATGTGTAAAGCTCTCCAATACCGATAAATCAATGACCAAGAACGTAATTCGAGCAGAATTGCACTGAGTAGACCCAGTAGTTTTGCTCAAACCCTTGGTGAAAAATGTTAATCGGTGAGAAAGAGATGGGGAAATTAGCTTTCTGTAAtgtgaaattgttttaaatatttaagtaatctTCTCATGCCCTTTGAATGAGAACTTTGCAGATCTTATGATTTTGAAACTCAACTTGACAGCGGAGGCCCTGGGAGCTCGTTTCAACTGGACTAAAGAAATGAGTTAAAAACACAACTGTTTTGTCTTGATGCAAGCTGTCCCTACAATGTCCTACGAATGTCTTTCCCCTCCCCTTTATATTTCATTGTAATTTTAAAGGTAGAATTTTTATAGAGGGTCATGTAACTACTTTTGCTTCTTTATGTTAAAATTTTTACAAAATATCTTGAAGTCTATTGTAGCCCATGTCCATTTTTACTTCTTTGCCTTTTAATAAATCTTGGCCTCGATGGACCACAAACTTTGTACCTGTGCTTGACCTTTAAAGTAAACAGCAAACCACTACACTATTCA

Function

symbol description
chtop Enables methyl-CpG binding activity. Involved in several processes, including mRNA export from nucleus; positive regulation of ATPase activity; and positive regulation of helicase activity. Located in cytoplasmic ribonucleoprotein granule and nuclear speck. Part of transcription export complex.

NR:

description
chromatin target of PRMT1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254725.3 True 1569 mRNA 0.49 6 13289714 13298879

Neighbor

gene id symbol gene type direction distance location
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 173743 13114501 ~ 13115971 (+)
LOC103031854 NA coding upstream 177661 13099037 ~ 13112053 (+)
thap7 NA coding upstream 195219 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 201788 13085746 ~ 13087926 (+)
LOC111195512 NA coding upstream 217057 13070483 ~ 13072657 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 3016 13301895 ~ 13319691 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 140613 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 155824 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 164420 13463299 ~ 13468103 (+)
LOC103043039 NA coding downstream 361008 13659887 ~ 13666328 (+)
G197325 snapin,LOC106569889 non-coding upstream 5197 13281682 ~ 13284517 (+)
G197317 NA non-coding upstream 49541 13237460 ~ 13240173 (+)
G197305 NA non-coding upstream 101860 13162293 ~ 13187854 (+)
G197309 NA non-coding upstream 145014 13143983 ~ 13144700 (+)
G197308 NA non-coding upstream 148232 13141169 ~ 13141482 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding downstream 79168 13378047 ~ 13438504 (+)
G197340 NA non-coding downstream 115481 13414360 ~ 13473071 (+)
G197341 NA non-coding downstream 154940 13453819 ~ 13475449 (+)
G197406 NA non-coding downstream 267489 13566368 ~ 13567811 (+)
G197410 NA non-coding downstream 287354 13586233 ~ 13605958 (+)
s100a14 s100a14,LOC108442988 other upstream 325365 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 361187 12889358 ~ 12928527 (+)
G197106 NA other upstream 515218 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1543479 11687399 ~ 11746235 (+)
polr2k NA other upstream 1735131 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 25507 13324386 ~ 13362658 (+)
rpa3 NA other downstream 977912 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1167386 14466265 ~ 14468882 (+)
G197665 NA other downstream 1495541 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2463044 15761923 ~ 15789854 (+)

Expression


Co-expression Network