LOC103042421


Basic Information

Item Value
gene id LOC103042421
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13463299 ~ 13468103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254751.3
tatatatattataacaagAAAAAAGGGGGAATACCAAGTGAGCTGTCTTGTTCTTGAGTGCCCTTTGAATGGCTACCTTATTCTGACACCAAAATATGAGCACCCTGGCACTACCCCTCACTGGGCAATCCCACCAGAGCTTCACTCTCTAGATTAGTTGAAGAGCCATCATTAGTCTGTTGGTTGTATGAGCTGCTTGCATAAGATGCTGAGCAGTAAGGCTACAGGCAAAGTGAAGTCCTTAGGGCCCTTGGATTTCTGGACGTGGTCACAGAAATGAGGAATAAACGTTGTTTatagaaataaacacagaaatacacagaaTTCACAGACTGGGTGTACAGCATGAGGCTCTGCAACTCTCAGCCTAGTCATTTAGTACAGCGTCTCGTGTATATGTCCATCTTCTTCCACCACACCCTATGCGCTCACAGCAGTCGACAAGTGTAGCCTAGGAAAGCATGAACAAAAACCCACTTCAATGCAGACCGCTTTTTAAAAACCTCAgatagtacacagcaggattagtcagcagacttcttctgatggagggatctgtacccactgtccgtggcaagtcagcaaaatggaagatgtaagtactttaaaataatgaatttcacAAGTGAAAAAGACTCAGTGGGAACATTGGGAAGGGTGGGGTGTAGCcaacaacagcttatttgcataaaagtgacagagcccatAAACAGATCATTTAGAAAGAAGCTGACACTAACCAGAACAGACCTGGTGAGatagatctctttatgtgagagtgattttgtgtcatgattcatgaacatgttttcaaTAGTCCAAAGACCTATTGTAACGTatttaaaaagaggtataatatgtacCCTTTGAAGAAGGGTGTGTGCCTTTATAAAAGAATTTGTAGGGAGGGTGCATTCAAAACTTGTTTTCAGTTTCTGTTCAAAGAATAAAGTAGAAGTCAGAAAGCTGCAGCAACAGGACGAAGGACAGTGCGATACAACTTCACACCATGGGCAGTCAATTAAATTTACCCGTATGGTCTAGCCTGCTGGCTCTAggaagtgttgttttattctttgtaGGCTTGGCGTTGGATGTGGACACTGTTATTTCACTGTTTCATGAAAGAAATTATGTCTACATGGGAGTGTCGATTGCCCTGCTGCTCATCTCCTCAATCATACTTCAGGTGATCAGCTTTATCTGGTATTCAGAACCTGACAAGAACCTGGAAACCACAGTAGAGACGTTTGTGAACAACAATGGCTTCATTGGAATGCTGCACATCCTACAGCTGGGTATTCTTCTCAGGTTGGCAGGTGTGGCGGAGATCAACATCCGAAACATTCGACAGAAAGAACGTTTTCAAAAGGGAGAAGTTGTGTTCCAGAACCACGAGATCAGCATGTTGAATCTGTTTAAGAAGTGCATGGGAAGTGCCCCCCAGGTTATTCTCAAGATTGTCAGGACTGTGCAGGAGCAAGATCCAGAGCCTTTTACAGtttttaaaattgCTGCTTCACTCGCCTTCATCTCCTTCAGTGTGTTGTTCAATCAAGACGTGTGTAGAATCACCCTTAAAGAGCGTAAAAAAAAGATCCCGTCTGCAGTTTTCTTCCTGTGGAACCTGTTTGTGATTCCTCTGCGGGTGGTTGCGGTGGCCCTCTTTGCCTCTGTCCTGCCTTTCTACAACCTTGTTCACTTCTTTTTTGTGTGGTTCCTGCTTTTTCTTTGGGCCTGGAGGCAGAAGACGGATTTAATGGAGGATAAAAGAGGTGAAGTTCTGTACCGGATAATTCTAGGAGTCATCTggtattttaactgtttttgtgGGACAAACGGAGTGACCAAAGTCAAGAGAAACATCTATGATGTGTTCATGTTGCTTGATACAATGCTGCTCCTGGGCTTGTGGTTTTGGAGGAGATCTGTGGAATCAGCTCGGTTGAATCCACTGATCGTAAATCCCTTGGTACTGCTCGGAGTACTGGCTGCGCTGTACTTTACCGGATTCCTGCTGAAGCAGCTTTACTACTGGAAGTTTCATCCCAAGTGCCCGTGTTTTAGATTTGAAGTTGAAGATCAAACGCCACAAGCACCTCTACAGAGAAGTCCTGCGACAATGGTGGATTCAGTAGAACCTGAGAGTGTAACACCGGAAACTATAACAGAACTCCAGCGAGTCACCAGTGCCgagaagaggatgagaaaaatGGCTTTAAATTTTTATGGTTAATTTAGACGTTAGACCATAATATAAGCACTTTGTCTTTCGGAAATTTATCCTGACtgtcaatatttaaatattcttagGCTTATTGATACTTTATTCTGAAATGGGGTTGTATGTACTTTAATGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254751.3 True 2362 mRNA 0.43 3 13463299 13468103

Neighbor

gene id symbol gene type direction distance location
LOC103036495 NA coding upstream 63 13454703 ~ 13463236 (+)
LOC103036187 LOC103036187,LOC108441814 coding upstream 16076 13439492 ~ 13447223 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding upstream 143608 13301895 ~ 13319691 (+)
chtop chtop coding upstream 164420 13289714 ~ 13298879 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 347328 13114501 ~ 13115971 (+)
LOC103043039 NA coding downstream 191784 13659887 ~ 13666328 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding downstream 202240 13670343 ~ 13794112 (+)
LOC103030231 NA coding downstream 434664 13902767 ~ 13905038 (+)
LOC111195557 NA coding downstream 518934 13987037 ~ 13988938 (+)
col28a1 NA coding downstream 833807 14301910 ~ 14339402 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding upstream 24795 13378047 ~ 13438504 (+)
G197325 snapin,LOC106569889 non-coding upstream 178782 13281682 ~ 13284517 (+)
G197317 NA non-coding upstream 223126 13237460 ~ 13240173 (+)
G197305 NA non-coding upstream 275445 13162293 ~ 13187854 (+)
G197309 NA non-coding upstream 318599 13143983 ~ 13144700 (+)
G197406 NA non-coding downstream 98265 13566368 ~ 13567811 (+)
G197410 NA non-coding downstream 118130 13586233 ~ 13605958 (+)
G197411 NA non-coding downstream 120902 13589005 ~ 13593041 (+)
LOC103039008 NA non-coding downstream 185581 13653684 ~ 13658653 (+)
G197459 NA non-coding downstream 249183 13717286 ~ 13718002 (+)
G197334 LOC108441809 other upstream 100641 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 498950 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 534772 12889358 ~ 12928527 (+)
G197106 NA other upstream 688803 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1717064 11687399 ~ 11746235 (+)
rpa3 NA other downstream 808688 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 998162 14466265 ~ 14468882 (+)
G197665 NA other downstream 1326317 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2293820 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2853839 16321942 ~ 16330240 (+)

Expression


Co-expression Network