LOC103042327 (ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276)


Basic Information

Item Value
gene id LOC103042327
gene name ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25529404 ~ 25560124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258808.3
TCAGTGTGAAGTGTGAAGAGGAAGGAGAGCCTGCAGAGCGGTTACCGACTCCGATCCACTTTCTCCGGCGATTCTCACGGGATTTCAATGTTCAGCCTGTTTTTTtgtttctgtgtagatttgggcCGCACATTTATGGCGTTTGTGAGCGGAGACTTCTGCCAGGCACAGCACCTCTCCTTTGAGAACAAGTGAATCATCAGCCCCCTGCGGGACTACGCTACCCAGAAACCCCCCTGACAGCAAACACACTGGGCCTTGTgtgtttctcattctctctcatatCCCCCTGGGATCAAGCATAGTCCTCAGCCTGAGCTCAAACGAGACCTCCCTCCCTTCCCTGCAGCTTTCTGTCTGTACAGTCAGTCAGAAACACCTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCCGCTGTTGAAATTACCTATGAGTGCATGAGGTTCCTCATCACGCATAACCCCACCAACTCTACCCTCAACAAGTTCACTGagGAGCTGAAGAAGTTTGAGGTGAATACacttgtgcgtgtgtgtgaggccACATACGACAAGGCACCTGTAGAGAGGGAGGGCATCCAAGTCCTGGACTGGCCCTTTGATGATGGAGCTCCACCCCCCACCCAGATTGTTGATGATTGGCTAAACCTCCTGAAGACTAAATTCCGAGATGAGCCAGGATGCTGCATTGCTGTCCACTGCGTGGCGGGATTGGGCCGAGCACCTGTATTGGTAGCCTTGGCCTTGATAGAGAGTGGGATGAAGTACGAGGATGCGGTGCAGTTTATACGACAgAAGAGACGTGGAGCCTTCAACTCCAAACAGCTTCTTTACCTCGAAAAATACAGACCTAAGATGCGGCTGCGGTTCAAGGATGCCAACGGTCACAATTGCTGCATCCAGTAACATGTCAGTTGTACACAACTAATGGGAAATTTTGCCTAGGGGAGAAAGTACATGCCGTGGGTAATTATTGTGATGATGATTTATACTCTGAGTCATGGCTAATCGATCACAGAGATGTAATGAATGAAAGCTATTCTGTGGATTCACCAGCTGTATGAATGAAAGAGGTCAAAGCACACAGATAAGCCTGGCCTTCTGGTTATCAATGTACCAGTACCAGGCTACAATAAACAAGGTGTGGCCCTTCTGATCTCCCAATTGTCCAAACTTGGgatagctttttatttttaattgttttgaaaattatgatttcaaCCATGGTGAAAGTATTTACAGTTGTGGAATGCTGATGATGCTTTTGATTATGATGAACATCACTGTTGTAATTGGAAAAGATGATGTgcatagcttaaaaaaaaaaagtcacaagaTAGTACcttgttttattaaaacaacaacTCTTAAGTTGTTCAGAGGAACCGGAGCATTCTTTGGAAATACAGTGCTGTTCTCCCCCTTCCTTGAAGTCACTTTTAATTTAGGGTCAGGCTGGGTTTAAATGTCAactgtatttattcactataatTAGTGTGTCTTGTCAGGAGTACGGTCGGGGCCagggcacttttttttttcttcctaatGGAGCCATGTTATCTTCACTTTTGTTTTCTGAATCTTTGGGGAGTGCAATATTCAGTCCAGCTTAGAGAGCAGTCATCTTTAGGAC
>XM_022683204.1
TCAGTGTGAAGTGTGAAGAGGAAGGAGAGCCTGCAGAGCGGTTACCGACTCCGATCCACTTTCTCCGGCGATTCTCACGGGATTTCAATGTTCAGCCTGTTTTTTtgtttctgtgtagatttgggcCGCACATTTATGGCGTTTGTGAGCGGAGACTTCTGCCAGGCACAGCACCTCTCCTTTGAGAACAAGTGAATCATCAGCCCCCTGCGGGACTACGCTACCCAGAAACCCCCCTGACAGCAAACACACTGGGCCTTGTgtgtttctcattctctctcatatCCCCCTGGGATCAAGCATAGTCCTCAGCCTGAGCTCAAACGAGACCTCCCTCCCTTCCCTGCAGCTTTCTGTCTGTACAGTCAGTCAGAAACACCTCTCCTGAATGGGGTAATCTACAGTTGTCTCATTGGATGACTGAAGGCCGTCTCGCCAACATGAACCGCCCTGCCGCTGTTGAAATTACCTATGAGTGCATGAGGTTCCTCATCACGCATAACCCCACCAACTCTACCCTCAACAAGTTCACTGagGAGCTGAAGAAGTTTGAGGTGAATACacttgtgcgtgtgtgtgaggccACATACGACAAGGCACCTGTAGAGAGGGAGGGCATCCAAGTCCTGGACTGGCCCTTTGATGATGGAGCTCCACCCCCCACCCAGATTGTTGATGATTGGCTAAACCTCCTGAAGACTAAATTCCGAGATGAGCCAGGATGCTGCATTGCTGTCCACTGCGTGGCGGGATTGGGCCGAGCACCTGTATTGGTAGCCTTGGCCTTGATAGAGAGTGGGATGAAGTACGAGGATGCGGTGCAGTTTATACGACAgAAGAGACGTGGAGCCTTCAACTCCAAACAGCTTCTTTACCTCGAAAAATACAGACCTAAGATGCGGCTGCGGTTCAAGGATGCCAACGGTCACAATTGCTGCATCCAGTAACATGTCAGTTGTACACAACTAATGGGAAATTTTGCCTAGGGGAGAAAGTACATGCCGTGGGTAATTATTGTGATGATGATTTATACTCTGAGTCATGGCTAATCGATCACAGAGATGTAATGAATGAAAGCTATTCTGTGGATTCACCAGCTGTATGAATGAAAGAGGTCAAAGCACACAGATAAGCCTGGCCTTCTGGTTATCAATGTACCAGTACCAGGCTACAATAAACAAGGTGTGGCCCTTCTGATCTCCCAATTGTCCAAACTTGGgatagctttttatttttaattgttttgaaaattatgatttcaaCCATGGTGAAAGTATTTACAGTTGTGGAATGCTGATGATGCTTTTGATTATGATGAACATCACTGTTGTAATTGGAAAAGATGATGTgcatagcttaaaaaaaaaaagtcacaagaTAGTACcttgttttattaaaacaacaacTCTTAAGTTGTTCAGAGGAACCGGAGCATTCTTTGGAAATACAGTGCTGTTCTCCCCCTTCCTTGAAGTCACTTTTAATTTAGGGTCAGGCTGGGTTTAAATGTCAactgtatttattcactataatTAGTGTGTCTTGTCAGGAGTACGGTCGGGGCCagggcacttttttttttcttcctaatGGAGCCATGTTATCTTCACTTTTGTTTTCTGAATCTTTGGGGAGTGCAATATTCAGTCCAGCTTAGAGAGCAGTCATCTTTAGGAC

Function

symbol description
ptp4a2 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Located in cytoplasm.

NR:

description
protein tyrosine phosphatase type IVA 2 isoform X2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258808.3 False 1643 mRNA 0.46 7 25529404 25560124
XM_022683204.1 True 1677 mRNA 0.46 7 25529404 25560124

Neighbor

gene id symbol gene type direction distance location
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding upstream 3318 25416568 ~ 25526086 (+)
trappc3 trappc3 coding upstream 152202 25370501 ~ 25377202 (+)
csmd2 csmd2,LOC107698986 coding upstream 453613 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 1278015 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1580411 23942554 ~ 23948993 (+)
anln NA coding downstream 7548 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 20864 25580988 ~ 25587640 (+)
rnf19b rnf19b,LOC107710473,LOC107724316 coding downstream 29424 25589548 ~ 25614781 (+)
macf1 macf1 coding downstream 64433 25624557 ~ 25848463 (+)
LOC103023238 bmp8a,LOC107556408,LOC107710496,LOC107724317 coding downstream 289404 25849528 ~ 25865274 (+)
G199684 NA non-coding upstream 150579 25378579 ~ 25378825 (+)
G199683 NA non-coding upstream 151258 25377397 ~ 25378146 (+)
G199669 NA non-coding upstream 220457 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 228548 25297042 ~ 25300856 (+)
LOC111195489 NA non-coding upstream 417129 25111809 ~ 25112275 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 364095 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 369800 25929924 ~ 25930410 (+)
G199746 NA non-coding downstream 412684 25972808 ~ 25973082 (+)
G199758 gabbr2,LOC106570447 non-coding downstream 563794 26123918 ~ 26133594 (+)
G199767 NA non-coding downstream 774592 26334716 ~ 26342264 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2660147 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3306368 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 4146404 21358464 ~ 21383000 (+)
G198815 NA other upstream 4726514 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5254550 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 57804 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1026115 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1271830 26831954 ~ 26892623 (+)
G200104 NA other downstream 1724096 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1744397 27304521 ~ 27305586 (+)

Expression


Co-expression Network