rp9 (rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274)


Basic Information

Item Value
gene id rp9
gene name rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26615144 ~ 26623597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258856.3
GGGGGACTCTTACTGTGACACATGAGAACCCAGCAGCCCAGTTTTCCGGAAGTAAATATGAGGATGTTAAGTTtgtagttctccagcagcagcGGACTGAGTTTCAGCgtgttgtttaaatattaaactgtaTATTATAAACTAAAGCTACACCTGTACCTTCAGTAGATGCCCCCGAATCAGTAGGAATGTCGGACAGGAAGCGGCGCAGAGAGCACAGCGAGGAGAAACGCGACAAAAAGAAGCACAGAGACTCTAAACACGAGGAGAAGAAATTCAAGAAGCAGACCGCTAAACTCAGCCAGGAGGTGCAGGCGCTAAAACACCTTGAGACTTTCTATGAGAACCCTCCTCCTGGACTTATAAAGGAAGAAGAATACAGACCTGAAGACTGTATACCTGATGCTCCTGGTAATGAGGATGCCAGGGATTTCTTGGCCCATGCACCAACCAAAGGACTGTGGATGCCTCTCGGAAAAGAGGTGAAAGTAATGCAGTgtTGGAGATGCAAGCGGTATGGCCACAGGACTGGTGACAAAGAATGCCCCTTTTTTATCAAAGGGAACCAGAAACTGGAGCAGTTTAGAGTGGCACATGAGGACCCAATGTATGACATCATTAGGGAAAACAAACGAAATGAAAAAGAGACCAGGATCCAACAGCTGAGACAGCTCTTGCAGGACACCACGTCTGATTCAGACTCTAaatccagctcctcctcctcctcctctcgccACACccacaagaagaagaagaaaaaggaaaagaaaaagaaggagaaagtgaaagaaaaaaagaagaagaagcacaagaagaagaagaaacacaCGTCCAAGAGTAGTGATGATGGCTCAGACTGAGAGGAGGATGTTAGTATTGATATCTCTGTTTACTGATGAGAGATGTTTCTAAAAGCAGCTGTAGAGATGTAGAAGCTACGGGGAGCTCTGCTGGACCTCTCCTTAGGCTCCACCCTTCCCCCTACTGTGCAGGGTGCTTCCTGAAGCTGCTTAATAATGCATACGGGCGTTTAATTCCCCCTGTCAATAAGGATGGTCTGCTTGTGTGACATCTCTATCCGCTCCCCCTATAGCTGGATGGATTATATTAGCATGTTTGCGTCTCAAGATTGTTTTTTGCCTGAAGAGGAAGTGAAGTCTGTATTGAATGAGTACAGATTGAATGtcactttattttgaaatggtgTTGCGTTTGATATCTTTTTGAATGTTGCGTGCGCTTTACAGATGATTCTTTATATAAAGCTTTTTACCCCACCAAGACTGGGTCAATAACCTAGACTAAAGCTAGATATCCAATGGATTTTCATCATATACACTGCAGGGTAGTCCATGACTAGGCTTCGTCCATGTATTTGACCGGCCATCCTGTGTGTTTTGAAAAGAAAGgaaatgtttgtaataaaatgcTGCTTCCATGTGCTGTTCATTTGTCAGACAGAAGCATGTAAATTAATATACTGCAAGTGTATTCATTCAGTACTGCtgtaaattcattcatttattcatttgaagtgactttattaaacacattttcagtGTTTCATTCA

Function

symbol description
rp9 Predicted to act upstream of or within RNA splicing. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor).

NR:

description
retinitis pigmentosa 9 protein

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19604 RP9, PAP-1; retinitis pigmentosa 9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258856.3 True 1570 mRNA 0.43 6 26615144 26623597

Neighbor

gene id symbol gene type direction distance location
elp2 elp2 coding upstream 501382 26078650 ~ 26113762 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding upstream 540733 25998229 ~ 26074411 (+)
sla LOC108425730 coding upstream 645792 25959452 ~ 25969352 (+)
LOC103024803 ndrg1a,LOC108425723,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 coding upstream 692733 25907057 ~ 25922411 (+)
LOC103031356 NA coding upstream 727746 25885213 ~ 25887398 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding downstream 3478 26627075 ~ 26747079 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding downstream 151294 26774891 ~ 26777801 (+)
fam133b fam133b,LOC107712925 coding downstream 270250 26893847 ~ 26899447 (+)
hepacam2 NA coding downstream 276071 26899668 ~ 26916183 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding downstream 298150 26921747 ~ 27131972 (+)
G199920 NA non-coding upstream 89768 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 117039 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 129576 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 272880 26334716 ~ 26342264 (+)
G199758 gabbr2,LOC106570447 non-coding upstream 481550 26123918 ~ 26133594 (+)
G199965 NA non-coding downstream 160420 26784017 ~ 26788851 (+)
G200051 NA non-coding downstream 609884 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 656016 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 670082 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 708417 27332014 ~ 27335222 (+)
c23h18orf21 LOC103027551 other upstream 1956 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 995009 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3745887 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4392108 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 5232144 21358464 ~ 21383000 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 208357 26831954 ~ 26892623 (+)
G200104 NA other downstream 660623 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 680924 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 1011082 27634679 ~ 27740109 (+)
G200235 NA other downstream 1191739 27815336 ~ 27818650 (+)

Expression


Co-expression Network