LOC103031356


Basic Information

Item Value
gene id LOC103031356
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25885213 ~ 25887398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258868.3
tatttaaatatcataatataggctaattataaaactgtaaatacaAGAGGCTGTGTAGCAGGAGCCCTTGAGCTGCGGTGGGCTTCTGAAAGTGCCGCCCCCATATTAACAACTCATACGATCTGAATACAGGAGCAGTTAGTAAAGAATGCACAAGAATAACCCCGCCTGTCGACCACCCTATAAATCTGAGCCCCCGGCCTCTCCACCAGTCAGTCCTTTCCTACCTTTCCTTTCCTACCTACACAGCAGTGATGAGCCCGTGCTCGAGCTTCAGACCAGCGCTGGAGGAGAACAGTGGAGTCCACAGGAGGAAATACAAGCGCTACGCTAAAGGGACTTATGTAGGACTGCTGGCCTACATCCTGCAGGACTCCCCAAACAAGATGCTCACCTTCAGACAGATCATGGAGAGACTGGGAGTGTTTGTTGCTGGGGACAGAAAGGGCCTGGAGAACAACATCAGAGTCTGCCTGTCCTCCAACAAGTGCTTTGTTAAGGTACCAGTTGATCCAGATTATCCCAATGCAAGAAGGAACTTCTGGAAAGTGGAGGAGAGTTGCATAACTCCGAAGATGCTACGTCGTCACTTTAAAGATATGACGGATATGTTGCCCAGTCTTGAGCCTCAGTGCCAGGTAAAGTGTGACACTGGAGCTGCACTAGATCCTCCATCACCAGCCTCAATCAGCAAGGAGAACACCCAGCCCGTCAAATTCAGCAGCTCATTCTCAATAGAGTCACTGCTGAAGAATGACCACAGCGCTCACCTGCGAATCCCACCTGTTCAGGACCGAGGAGGCCTGAATGACCTCAGACTGACCCCTGCAGCCGGCAGCAGTGTCTGTTGGGAACGTTCAGTCTACAGCTTCACACAGTCCTATTACATGTacagttcagcagcagcaggactCTCAGGAATCCCTGCAGTGAGGAAGAGCTTATCTGCTGCACACGAGCATGCACTGTACCCATCCCAGCTCTCATCATATCACAGTCAGACTGTCCAGAGCAGGATCTCAGCGTCTCCTCCACTGCCACATGATCTCAGATATCTGAGATGGTAAATGATCCCAATATACAACATGTTGCACTTTGTACATAGATTTAGATTTGTACATAAAGACGATGACCCCTCCCATCAAAATGAAAGAATTCCTTGCTAGAAAAATGTCTCctgttctctttattttttcatttttggtggtggtggtttggCGGTTCgctgtggttggtgtggttaCCTCTAATGTACATGTAACCATAAGGGTTGTGTTCAGTTTCctaaacaacattaaaactgtatgtAATACTGTTTTTAGGCAGAGTAATATCTGGTGTAACAAAATCTGTGCACATTTCTTCTGTAGTGCCACACTGACTCTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0003146 heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035054 embryonic heart tube anterior/posterior pattern specification biological_process
GO:0001568 blood vessel development biological_process
GO:0048318 axial mesoderm development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0001947 heart looping biological_process
GO:0021508 floor plate formation biological_process
GO:0032444 activin responsive factor complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258868.3 True 1386 mRNA 0.47 3 25885213 25887398

Neighbor

gene id symbol gene type direction distance location
LOC103023870 si:rp71-45k5.4,psma2,LOC103023870,LOC103045926,LOC107724313,LOC108425697,LOC108440756,LOC107592434 coding upstream 4556 25876558 ~ 25880657 (+)
LOC103023238 bmp8a,LOC107556408,LOC107710496,LOC107724317 coding upstream 19939 25849528 ~ 25865274 (+)
macf1 macf1 coding upstream 36750 25624557 ~ 25848463 (+)
rnf19b rnf19b,LOC107710473,LOC107724316 coding upstream 270432 25589548 ~ 25614781 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding upstream 297573 25580988 ~ 25587640 (+)
LOC103024803 ndrg1a,LOC108425723,LOC107670279,LOC107724345,LOC107710403,LOC107653857,LOC107556406 coding downstream 19659 25907057 ~ 25922411 (+)
sla LOC108425730 coding downstream 72054 25959452 ~ 25969352 (+)
ctnnal1 ctnnal1,LOC107653856,LOC107670281,LOC107710384 coding downstream 110831 25998229 ~ 26074411 (+)
elp2 elp2 coding downstream 191252 26078650 ~ 26113762 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding downstream 727746 26615144 ~ 26623597 (+)
G199691 NA non-coding upstream 336872 25516897 ~ 25548341 (+)
G199684 NA non-coding upstream 506388 25378579 ~ 25378825 (+)
G199683 NA non-coding upstream 507067 25377397 ~ 25378146 (+)
G199669 NA non-coding upstream 576266 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 584357 25297042 ~ 25300856 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 36821 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 42526 25929924 ~ 25930410 (+)
G199746 NA non-coding downstream 85410 25972808 ~ 25973082 (+)
G199758 gabbr2,LOC106570447 non-coding downstream 236520 26123918 ~ 26133594 (+)
G199767 NA non-coding downstream 447318 26334716 ~ 26342264 (+)
ndufs5 ndufs5 other upstream 265078 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 3015956 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3662177 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 4502213 21358464 ~ 21383000 (+)
G198815 NA other upstream 5082323 20802371 ~ 20802890 (+)
c23h18orf21 LOC103027551 other downstream 698841 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 944556 26831954 ~ 26892623 (+)
G200104 NA other downstream 1396822 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1417123 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 1747281 27634679 ~ 27740109 (+)

Expression


Co-expression Network