hepacam2


Basic Information

Item Value
gene id hepacam2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26899668 ~ 26916183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259798.3
ACACTAAATTTTCACTCCCTATAACAATACTTAGTATAACCACCattcgctgcaattacagctgcaagtcttttggggtatgtctctaccagctaAGTCACAAAAGGTGTATTTTCACTGAGTCTAAATTACATACAGCTGGACTctcacttaaaatctctataaaatatattttaagtttgtgGGTGTAAGGTGACCAAAATATGAAaaggttcaaggggtatgaatacttttacttttactgtacaCTGTCCCAATTCATGTTCATAGACTAGGGACTGAGTGTGGACTTGAAGGTGAAAACGTGTGAGGGGAATTTTCTTGAGAGTGTATGGGTGCGGGGGAAAGTTTGCATATCCTtgtgtacactgtgtgtgtgtgttttaagtgtgtgtgtctagAGCTACTAGAGGCTTAGGTGTCTGTGTTCATTCAGTTGTATCTACCCAACCGCTGTGTTGTGCTCCAGTCCCCTCACAAATGGGTGTATTTTCTCTGTGTGATCTGATACCTTGTACTTGATCCCATGTATACTCCTGTCAGAGCCTTTTGATGGAGCTGTATGTGGCCCTGGAGGAGGTGGCGGCCTTTCTGAGCTTCTGCCAGGTACGGTCTCCTCCTGCTGTCTCGTGGGAGGGGCCTCATTTCACTGGCAAATGCTGTCACCAGTTCCCCTTTTCTTGTCACTAGACTCCTAGAGCTCCTGGAACGCAGCGAGCAGAAATGGGAGCTGTCGGAGTTGCTGTGGTTGTTCTTCTATGTGCCATGACTGCAATGTCAGGTGCCGACATGGAGTTAATTACAGTGCCTTCTGTCGTGTATGGGATCAAGGGTgaatctctctctatacctGTGGAGACTCGCTTTGATGTGAAAGCAGTAAAATTTCAGGTCTTCTGGTACGAGAACAGGACTGGTGCATTACTGGTTGGATATGAGAATGGTCGCAAGGCCATGACAAATCTGCAGCTGGAAGACACATTCATCTTCAGTCCGCACAACTTGTCCCTGACCTTTAATCAGCTGGACTTGGCTACTGAGGACAACTACCGGCTGGAGATCATCTTCTCTGGCAAAGACAAGAAACCTGAGAAGCTCACAAGAACTGTGAGACTTATCGTAAACGTGCGTCTTTCCCCTCCTGTGTTGGTGAAGAACTGGCAAGGCACTCTTGTGGAAGACCAGGACAATGTCACTCTGACCTGCGTTGTGGAGAAAGGAGCTAAAGCTAGGTTTCAGTGGCTCAAAAACAACAAACCGTTCGAACTGAGTAAGCGTCACACTTTCTCCCAAACAAACAACTCCCTACTCATCAGCCCTGTGAGGAAGGAGGACATTGGCATGTACAGCTGCGTGGCAGAAAACGCCATCAGCCAGAAACAGAGCCAAGCCATGGAACTCAGTGTGTTCTATGGACCTTATAACCTGAAAGTGAACACAGACAACGGTCTGAGGATTGGAGAAGTGTTCACTGTAGACCATGCAGAAGTGATCTACTTTGACTGCTTGGCTGACTCGAACCCCCCCAACACATGCGTGTGGATCTCCAGGACGGGCAACAACACAGAAGTCCTCATGACTGGCCCTCGCTTTGAGGTTCCTTCATACACGTTAGGTCAACCCTCCAAGTTCTTGTGCCGGGCCTTCAACAACATGACACAGAAGCAGGACGAAACTCACTTCACACTGGTGGTGGCCAATCTTGGAAGAGGGCGTGAGAAGCTGCAGGGGGCGAGTACAGTATCTCCTTTAACTGTGATCACCGTCCTCGCACTGATCATCATTATATGTATGGTGTTTGTGTTCTTCAAGAAGACCTGCCACCCTAAAcgagTGTTGATGAAAATCTACAGCAGGCCTATGCCAGAACAAAAAGGACTGCACCGCTCAGGTCACGAGGACGCTACTGAAGACTTTGGCATCTATGAGTTTGTCTCCCTACCGGGAGGAAAGATGGAGTCAAACCATGCATCATGCAGATCACTGGCACGGCTGGATTCGGCCAAAGATTTGCATACCACCATCTATGATGTCATCCGACATGTTCCTGAAACTCCCACACTCAGTCTATTGAAGTGAGGTGGTtcagcacacacacgcacactcacgcacacacatacacacaggctGGATCTGGTGACGGAATCagttgtgtttttatgaaaagcACAAGCCGTTACTCCTGTGGACGAGCAGACTAATGCCATcgcttctttatttctttctaaaGTCACTTGAATCTGATGCTGTTGAGTAATGGATGAAGACCCTTAATCTTAAGCTTAATCGTTATTCCTCTGGCTTATATTTTAtgctgatatttatttatttcgtgTGGGTTCTCTCAGTTCTGTACATAggctgttgattttttttttttgtcaaacacTGCTGGTCAAAAGTCTTAGAACTTCCCCAGGTTCTTCATTAGTTTACTGGGCAGGGCTGCATGAAGAGTTTTGCTTCTCTTTACAGTTGAAACTGAGACTTGTCATGTGATCCGCCCATCACACAAGCTGTTGATTCTTAGAAACTGGTCCTCTGATGTTGTTGTGGATTTGCGTTTGTCAGACCTCTTCCTTCCAGTTACCGTAAAGCTTTTTATGGTGTTAGAAACAACAATATGTAGTTCCAGTATAGTCATAAAAATGAGCACATCGCGGGACAGCCAATATCACACAAGGCAAATTAAACTACACACATGCTACAGCATGTTTGATACCAACCAAAGTAGGCCTGTCAACTGTTGTAATTGATGACATATGGGATCCTAGGGATAATTGCCTAAAGAAATAgcggtgttctaaaacttttgactggttgtatacactgtaaaaagattATTCACTGTTTTACCTGAAGAAAGTTTAACTGGCTGCCTTAACATGTACATTTCATTGAATATAAATTAATGGTACAGATATAATTAGTCTGAGGACTTTTAGACATTAAGAACTTCAAGAGAAATGGTAAGTCAGCCAGTTAAacaacagatcattttttatagttctttttgtgtcaaaattgttGCGCATTCGCAACAGCACTGACCTTCAGTTTCAGTGGTGTTAGTAATGACTGTCTGAAAAGCATTGTGGGAATGATGTGAGTTCTGTGTTTGTATACTGTACATGTTTGCTATCGGCCACACTGAAACCAGAGAGTATTTATGTGTTCGTACTGTTATACCAAGTGCAGCCAAGCCCTAATTCCATTGCTTTGCTTGAAAtatgaatgtaaataatatgcaatttttttattctaataatcTATTTTTGCACATAGCAATGACATTGTGTACTGCGGTAATCTGTGTCATAGAAATGAGATATTGTTCTTTATGTTGCCTTGAAGCAGTTTCTGCACAGATCAGTTTCTGCTGTTAGATTGTAAGATTTCCTTGCTCCtattttacagttaataaataaaaatgctctccattttgaaaataaagattttaagcAATTGCACATGAATATGAA

Function

NR:

description
PREDICTED: HEPACAM family member 2

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259798.3 True 3482 mRNA 0.43 9 26899668 26916183

Neighbor

gene id symbol gene type direction distance location
fam133b fam133b,LOC107712925 coding upstream 221 26893847 ~ 26899447 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 121867 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 152589 26627075 ~ 26747079 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding upstream 276071 26615144 ~ 26623597 (+)
elp2 elp2 coding upstream 785906 26078650 ~ 26113762 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding downstream 5564 26921747 ~ 27131972 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding downstream 391283 27307466 ~ 27331589 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 501390 27417573 ~ 27443050 (+)
casd1 casd1,LOC106570464,LOC107722141 coding downstream 534826 27451009 ~ 27466504 (+)
ppp1r9a ppp1r9a coding downstream 562553 27478736 ~ 27588721 (+)
G199965 NA non-coding upstream 110817 26784017 ~ 26788851 (+)
G199920 NA non-coding upstream 374292 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 401563 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 414100 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 557404 26334716 ~ 26342264 (+)
G200051 NA non-coding downstream 317298 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 363430 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 377496 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 415831 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 440537 27356720 ~ 27356941 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 7045 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 286480 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1279533 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 4030411 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4676632 22219265 ~ 22223036 (+)
G200104 NA other downstream 368037 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 388338 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 718496 27634679 ~ 27740109 (+)
G200235 NA other downstream 899153 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 1062099 27978282 ~ 27987895 (+)

Expression


Co-expression Network