vps50 (vps50,si:ch211-287b5.1,LOC107669849,LOC107722151)


Basic Information

Item Value
gene id vps50
gene name vps50,si:ch211-287b5.1,LOC107669849,LOC107722151
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26921747 ~ 27131972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259800.3
CGTGAGCACAGAGAAACATGGCAGcggtctgagagagagaggtgtattGAGAGGCTGTGTGAAACATTAGTGCAGTAGGATCCGCGGAGCTGGATTTACCCCCGTGCTGAGCTGTAAGATGCAGAAGATCAAGTCTCTGATGTCCCGCCAGGGCTTGAAAAGCCCTCAGGAGAGTATGGCAGATATGAGCCCTGTAGAGAACTTCAGGATCCCCAGCAAGgaGGAGCTAAGGGAGCTTAGGGAGCAGCCCATCGATCCCCAGGCTGAGCAGGAGCTCATTGACAGCATAGAGGAGATTTACTTCTCCAACGACTCCTTTGACATGGTTCAGTATGAGCTTGAGAAACTCCCCCCAGAACTGAACCTGCAGGAACTGGAAGAGTACAGAGATAAGCTGAAACAGCAGCAAGCAGCCGTGTCGAAAAAAGTGGCAGACCTCATTCTAGAGAAGCAGCCATCCTATGTGAAGGAGCTGGAACGAGTTACGTCCCTCCAGACCAACCTGCAGCTGGCCGCAGTCATCTGCACCAACGCTAGGAGgcAGCTGAGCTCTGCTAAAGAGGGCTTCACAGAAGCTAGTCTAGGGCTCCTAGCCAACCAGAGACGGAGACAGCTGTTGACAGGATTGCTGAAGTCGTTAAGAACCATAAAGACTCTGCAAAGAACAGATGTTCGACTCAGTGAGATGCTGGAGGAGGAGGACTATCCAGGTGCGATCCAGTTGTGTTTGGAATGCCAGAAGGCTGCCAGCACTTTCAAGCACTACAGCTGCATCAGtgAGCTAAACTCAAAGCTGCAAGACACCCTGGAACAGATTGAGGAGCAACTGGATGTGGCTCTGTCCAAAACCTGCAAGCACTTTGATGTCTCGCACTACACCAAAGTTCAGCTTGCATACACACTCCTGGGCAAGACGCAGACTGCTATGGATCAGCTCCACATGCACTTTACCCAGGCCATTCACAACACAGTGTTCCAGGTGGTGCTGGGCTATGTGGAGCTGTGTGCTGGCAACGCAGATACCAAGTTCCAGAAGATGCAGTACAAAGATCTCTGCACGCACATCACTCCAGACAGCTACATCCCCTGCCTGACGGACCTCTGCAAGGCTCTGTGGGAGGTAATGCTCAGCTACTACCGGACCATGCAGTGGCACGAGGAGCATGACAAAGAGGAGGCGGCTGTCCCTGATGCAGATGGAACAAATAGTGAAAGCCCCGGCGATTCTACAGTGGGTCGCAGCTATGTGAAGAAGAAGCTGGAGCATGGCCTCACCCGCATTTGGCAGGACGTCCAGCTAAAAGTGAAAGCCTATTTACTCGGCACAGACATGTCCAACTTCAAGTACGACGACTTCATTGTGGTGCTGGATGTTATCAGCAGGCTAATGCAAGTGGGGGAAGAGTTCTGTGGCAGTAAGTCAGAGGTGCTGCAGGAGTCCATTAAGAGGCAGAGTGTGAATTACTTTAAGAACTATCACAGAACTCGCCTGGAGGAACTGAGGATGTTTCTGGAAAATGAAACGTGGGAGTTGTGCCCTGTGAAGTCCAACTTCAGCATTGCCCAGCTTCATGAGTTTAAGTTCATGGGACAATGCCGATCTCCATCAGTTTCCCCAAGCCGACAGCCGACTTCCAGCGAGCCTGTGGAGCTCTCCCTGTTTGAGCAGTTTGTTCAAGGAGGAAACCCTTTTGAGATGCAGATAGACAATAAAGAAGAGGAGACTGAAGATGTCTTGGCCTCCAATGGGtatGAGTCAGATGAGCTGGAGAAGAATGTATATCAGGACTATGACAGTGACAGTGATGTGGCGGAGGAGCTGAAGCAGGACTATGTGGATGAGCAGACCGGAGATGTTCCTGCTAAAAGcGTGTCCAGAGAGACGCTGCGCAGCAGAAAGAGGTCCGACTACAATCTGAACAAAGCCAACGCCCCCATTCTGACCAACACCACCCTCAACGTGATCCGGCTGGTTGGCAAGTACATGCAGATGATGAACATTCTAAAACCCATCGCCTTTGATGTCATCCACTGCGTTTCCCAGCTTTTCGACTATTACCTGTACGCAGTCTACACCTTCTTCGGCCGGAATGAAATGCATGCTACTTGTCCATCCACACCCGTCCCAGGTGGCCAGCCGGGAGGCTCCAGACAGGTGCCCCCCGGCTGCTGGTATGAATCACCAGGGCTGGGTCTGATCAGCAGCAGACTGAGGACTACGCTCAACCGCATCCAAGAGAGCCTCATAGACATGGAGACAGGAGGGGAAAGTATAGGCCCCCATGGACCCCCAGAGGACAGGAAGGAGAAGGTACCCAGCCCTCACCTGAGCCAGCTGGTGGTGCTGACGGCCAGCGGGACACTCTACGGCCTGGCTGAGAGAGTGGTCGCCACAGAGTCGCTAGTGTTCCTGGCCGAGCAGTTTGAGCTCCTGCAGCCTCATCTGGACACCATGATGCCTCCAGCCAAGAAACCCTTCCTCCAGCAGTTCTACTCACAGACGGTGTCCACGGCCAGCGAGCTGCGCAAGCCCACTTACTGGATCGTGGCAGCCAAAGCCATCGATTATGAGcagatgctgctgctgatggcGGGAGTGAAATGGGACATTAAAGAGATAATGTCACAGCACAATGTCTATGTGGATGTCCTTTTAAAgGAGTTTGAGCAGTTTAATAAAAGGCTTGGAGACGTCTCCAGACAAGTGCGGATCCCTTTGCCGGTGTCCAACGTCCTCTGGGAGCACTGCATCCGACTGGCCAACAGAACGCTAGTAGAGGGCTATGCTAATGTGAAGAAGTGCAGTAACGAGGGACGAGCCCTGATGCAACTGGACTTCCAGCAGTTCCTCATGAAGCTGGAGAAACTGACTGACCTCAGGCCCATCCCAGATAAGGAGTTTGTGGAGACCTACATTAAAGCTTACTACCTGACTGAGAATGACATGGAGCAGTTCATCAAGAACCACAGGGAATATTCCATGAAGCAGCTGGCCAACCTGGTCAACGTGTGCCTCGGCTCCCACATCAACAAGAAGGCCAGGCAGAAACTCCTCGCAGCTATTGATGACATTGACCGACCAAAAAGATAAACAGCAGCCGGGCGCACGGGCAAAAAGTGGAATCACAGTGGGAATCATATACACGGTTATTAATGTGCAGAATATTCCAGCATGCAGGACTAGCATTTTATCTTCAACAAATGtttctgctgcttttttttgtgcacaactgttgttgtttttttttcttcttgttttgcGAATGTAACCAGCTTTCACTATTACACCACAGGACACTGGTCTATTAATAGCTCTTTCATAGCTGCACATACATCAGTTAACTGACTATCCAGATGAACGAGTGAAtgacacttattattattaaaatataaatgtaaaaaaaattataataaaaatgaaaaacaatcgGAGATGCTGATGGTTCAACAAGGATCTTTGTGAGCCTGAGAAACTCTATTTGTAGGTGAAGGTTTGATGTTTTCAAATGTTGCAtggacacttaaaaaaaaatgctgaaaattaTTCATTTCTATCCATTGGAGGGTGAAAAAACCTGGGATTAGGTCTGTCaggataattattttttatggaGGGTATTTTGTCCTAGAATaccaatatttaaatattgatagtcaatattataatagttttaggTCTATTGTATGCCATTTATAGTGActgaaatataagaaaaaatgcAGTTATACCCTATTAGTGAGCAATTGCCTTTGAATTATTAATAGTTtggaaaatgtatgttttttgccTATTAATATAGCCTGTTAGAAGTTTGCAGTATATATTCAAATGCTGTTTATTTTAGATAGAAAGACTGGCCATAAAAAAGGTTCAttctcatgaaaaaaaaacccacaatgtgcaatattgaggtctgaaaaaaCGATTGAGGTCATTTCCATATATTACACAATAAGTcattaatgtaattatcgtgacagacctACCTGGGATGCCGTCATGTGTGATCGTATGGTTcgtatgtttgtttgttgaaCCCTGTTACTCTTACTAATCTGTCTGCTCTGtgttaaaacatatttagtccttttgttttgttttgttttttaaaaaaataaatgattttattattatttatcccAATGATTCATATGTATGTAGTTGACTGATGTATCAGTCACAGTTTGGACAGttccttttttgtttgtattgtttttgtttgttcattttcacAAAATAATATCAATCTTAAAGTTTCGGCTGCTCTTCCTGTACTTGTATGTGTAATTCTACTCTATGAACATGATAACACTTGGCTGCAGGACGTCAGTCTGCACAGGGTGTCCGTGACGCAGACggtttatatactgtaaatgtgaGTGGCAAAACAGCATTCTATTTATTTCAGCAGCTACTGTAATTTTGTACACCCAGGTCGATCCAGCAAACTTGATCTGTAGATCTGTCATAAAAGTAGAATTATCTTGCTGTTACTCTGTAGTGGTCTGAAACAAAGTATTACAGCACTGTCACtcaaaaaaaaccttgtatttcCACAGTTTGTGGTCTAATTTGTATCTGACATGATGATAGAACCAATAGACGCTCTCTAAAATAACTTGatgtgaatctttttttttttttccatcgaCTTCCATTTAAAATTAAGCAAGTTgtttcttctcctgtaatgttttattttagagatacaaggtttttgtgtgacagaaATGATTAcatatgtattttaataattgattaacACAATGAAGAAAATAACGTCCACGAAAATAAATACACTAACATGAATGTTA
>XM_007259801.3
CGTGAGCACAGAGAAACATGGCAGcggtctgagagagagaggtgtattGAGAGGCTGTGTGAAACATTAGTGCAGTAGGATCCGCGGAGCTGGATTTACCCCCGTGCTGAGCTGTAAGATGCAGAAGATCAAGTCTCTGATGTCCCGCCAGGGCTTGAAAAGCCCTCAGGAGAGTATGGCAGATATGAGCCCTGTAGAGAACTTCAGGATCCCCAGCAAGgaGGAGCTAAGGGAGCTTAGGGAGCAGCCCATCGATCCCCAGGCTGAGCAGGAGCTCATTGACAGCATAGAGGAGATTTACTTCTCCAACGACTCCTTTGACATGGTTCAGTATGAGCTTGAGAAACTCCCCCCAGAACTGAACCTGCAGGAACTGGAAGAGTACAGAGATAAGCTGAAACAGCAGCAAGCAGCCGTGTCGAAAAAAGTGGCAGACCTCATTCTAGAGAAGCAGCCATCCTATGTGAAGGAGCTGGAACGAGTTACGTCCCTCCAGACCAACCTGCAGCTGGCCGCAGTCATCTGCACCAACGCTAGGAGgcAGCTGAGCTCTGCTAAAGAGGGCTTCACAGAAGCTAGTCTAGGGCTCCTAGCCAACCAGAGACGGAGACAGCTGTTGACAGGATTGCTGAAGTCGTTAAGAACCATAAAGACTCTGCAAAGAACAGATGTTCGACTCAGTGAGATGCTGGAGGAGGAGGACTATCCAGGTGCGATCCAGTTGTGTTTGGAATGCCAGAAGGCTGCCAGCACTTTCAAGCACTACAGCTGCATCAGtgAGCTAAACTCAAAGCTGCAAGACACCCTGGAACAGATTGAGGAGCAACTGGATGTGGCTCTGTCCAAAACCTGCAAGCACTTTGATGTCTCGCACTACACCAAAGTTCAGCTTGCATACACACTCCTGGGCAAGACGCAGACTGCTATGGATCAGCTCCACATGCACTTTACCCAGGCCATTCACAACACAGTGTTCCAGGTGGTGCTGGGCTATGTGGAGCTGTGTGCTGGCAACGCAGATACCAAGTTCCAGAAGATGCAGTACAAAGATCTCTGCACGCACATCACTCCAGACAGCTACATCCCCTGCCTGACGGACCTCTGCAAGGCTCTGTGGGAGGTAATGCTCAGCTACTACCGGACCATGCAGTGGCACGAGGAGCATGACAAAGAGGAGGCGGCTGTCCCTGATGCAGATGGAACAAATAGTGAAAGCCCCGGCGATTCTACAGTGGGTCGCAGCTATGTGAAGAAGAAGCTGGAGCATGGCCTCACCCGCATTTGGCAGGACGTCCAGCTAAAAGTGAAAGCCTATTTACTCGGCACAGACATGTCCAACTTCAAGTACGACGACTTCATTGTGGTGCTGGATGTTATCAGCAGGCTAATGCAAGTGGGGGAAGAGTTCTGTGGCAGTAAGTCAGAGGTGCTGCAGGAGTCCATTAAGAGGCAGAGTGTGAATTACTTTAAGAACTATCACAGAACTCGCCTGGAGGAACTGAGGATGTTTCTGGAAAATGAAACGTGGGAGTTGTGCCCTGTGAAGTCCAACTTCAGCATTGCCCAGCTTCATGAGTTTAAGTTCATGGGACAATGCCGATCTCCATCAGTTTCCCCAAGCCGACAGCCGACTTCCAGCGAGCCTGTGGAGCTCTCCCTGTTTGAGCAGTTTGTTCAAGGAGGAAACCCTTTTGAGATGCAGATAGACAATAAAGAAGAGGAGACTGAAGATGTCTTGGCCTCCAATGGGtatGAGTCAGATGAGCTGGAGAAGAATGTATATCAGGACTATGACAGTGACAGTGATGTGGCGGAGGAGCTGAAGCAGGACTATGTGGATGAGCAGACCGGAGATGTTCCTGCTAAAAGcGTGTCCAGAGAGACGCTGCGCAGCAGAAAGAGGTCCGACTACAATCTGAACAAAGCCAACGCCCCCATTCTGACCAACACCACCCTCAACGTGATCCGGCTGGTTGGCAAGTACATGCAGATGATGAACATTCTAAAACCCATCGCCTTTGATGTCATCCACTGCGTTTCCCAGCTTTTCGACTATTACCTGTACGCAGTCTACACCTTCTTCGGCCGGAATGAAATGTATGAATCACCAGGGCTGGGTCTGATCAGCAGCAGACTGAGGACTACGCTCAACCGCATCCAAGAGAGCCTCATAGACATGGAGACAGGAGGGGAAAGTATAGGCCCCCATGGACCCCCAGAGGACAGGAAGGAGAAGGTACCCAGCCCTCACCTGAGCCAGCTGGTGGTGCTGACGGCCAGCGGGACACTCTACGGCCTGGCTGAGAGAGTGGTCGCCACAGAGTCGCTAGTGTTCCTGGCCGAGCAGTTTGAGCTCCTGCAGCCTCATCTGGACACCATGATGCCTCCAGCCAAGAAACCCTTCCTCCAGCAGTTCTACTCACAGACGGTGTCCACGGCCAGCGAGCTGCGCAAGCCCACTTACTGGATCGTGGCAGCCAAAGCCATCGATTATGAGcagatgctgctgctgatggcGGGAGTGAAATGGGACATTAAAGAGATAATGTCACAGCACAATGTCTATGTGGATGTCCTTTTAAAgGAGTTTGAGCAGTTTAATAAAAGGCTTGGAGACGTCTCCAGACAAGTGCGGATCCCTTTGCCGGTGTCCAACGTCCTCTGGGAGCACTGCATCCGACTGGCCAACAGAACGCTAGTAGAGGGCTATGCTAATGTGAAGAAGTGCAGTAACGAGGGACGAGCCCTGATGCAACTGGACTTCCAGCAGTTCCTCATGAAGCTGGAGAAACTGACTGACCTCAGGCCCATCCCAGATAAGGAGTTTGTGGAGACCTACATTAAAGCTTACTACCTGACTGAGAATGACATGGAGCAGTTCATCAAGAACCACAGGGAATATTCCATGAAGCAGCTGGCCAACCTGGTCAACGTGTGCCTCGGCTCCCACATCAACAAGAAGGCCAGGCAGAAACTCCTCGCAGCTATTGATGACATTGACCGACCAAAAAGATAAACAGCAGCCGGGCGCACGGGCAAAAAGTGGAATCACAGTGGGAATCATATACACGGTTATTAATGTGCAGAATATTCCAGCATGCAGGACTAGCATTTTATCTTCAACAAATGtttctgctgcttttttttgtgcacaactgttgttgtttttttttcttcttgttttgcGAATGTAACCAGCTTTCACTATTACACCACAGGACACTGGTCTATTAATAGCTCTTTCATAGCTGCACATACATCAGTTAACTGACTATCCAGATGAACGAGTGAAtgacacttattattattaaaatataaatgtaaaaaaaattataataaaaatgaaaaacaatcgGAGATGCTGATGGTTCAACAAGGATCTTTGTGAGCCTGAGAAACTCTATTTGTAGGTGAAGGTTTGATGTTTTCAAATGTTGCAtggacacttaaaaaaaaatgctgaaaattaTTCATTTCTATCCATTGGAGGGTGAAAAAACCTGGGATTAGGTCTGTCaggataattattttttatggaGGGTATTTTGTCCTAGAATaccaatatttaaatattgatagtcaatattataatagttttaggTCTATTGTATGCCATTTATAGTGActgaaatataagaaaaaatgcAGTTATACCCTATTAGTGAGCAATTGCCTTTGAATTATTAATAGTTtggaaaatgtatgttttttgccTATTAATATAGCCTGTTAGAAGTTTGCAGTATATATTCAAATGCTGTTTATTTTAGATAGAAAGACTGGCCATAAAAAAGGTTCAttctcatgaaaaaaaaacccacaatgtgcaatattgaggtctgaaaaaaCGATTGAGGTCATTTCCATATATTACACAATAAGTcattaatgtaattatcgtgacagacctACCTGGGATGCCGTCATGTGTGATCGTATGGTTcgtatgtttgtttgttgaaCCCTGTTACTCTTACTAATCTGTCTGCTCTGtgttaaaacatatttagtccttttgttttgttttgttttttaaaaaaataaatgattttattattatttatcccAATGATTCATATGTATGTAGTTGACTGATGTATCAGTCACAGTTTGGACAGttccttttttgtttgtattgtttttgtttgttcattttcacAAAATAATATCAATCTTAAAGTTTCGGCTGCTCTTCCTGTACTTGTATGTGTAATTCTACTCTATGAACATGATAACACTTGGCTGCAGGACGTCAGTCTGCACAGGGTGTCCGTGACGCAGACggtttatatactgtaaatgtgaGTGGCAAAACAGCATTCTATTTATTTCAGCAGCTACTGTAATTTTGTACACCCAGGTCGATCCAGCAAACTTGATCTGTAGATCTGTCATAAAAGTAGAATTATCTTGCTGTTACTCTGTAGTGGTCTGAAACAAAGTATTACAGCACTGTCACtcaaaaaaaaccttgtatttcCACAGTTTGTGGTCTAATTTGTATCTGACATGATGATAGAACCAATAGACGCTCTCTAAAATAACTTGatgtgaatctttttttttttttccatcgaCTTCCATTTAAAATTAAGCAAGTTgtttcttctcctgtaatgttttattttagagatacaaggtttttgtgtgacagaaATGATTAcatatgtattttaataattgattaacACAATGAAGAAAATAACGTCCACGAAAATAAATACACTAACATGAA

Function

symbol description
vps50 Predicted to enable SNARE binding activity. Predicted to be involved in endocytic recycling. Predicted to act upstream of or within retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is expressed in head and heart. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex).

NR:

description
PREDICTED: coiled-coil domain-containing protein 132 isoform X1

GO: NA

KEGG:

id description
K23288 VPS50; syndetin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259800.3 True 4815 mRNA 0.45 29 26921747 27131972
XM_007259801.3 False 4735 mRNA 0.45 28 26921747 27131967

Neighbor

gene id symbol gene type direction distance location
hepacam2 NA coding upstream 5564 26899668 ~ 26916183 (+)
fam133b fam133b,LOC107712925 coding upstream 22300 26893847 ~ 26899447 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 143946 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 174668 26627075 ~ 26747079 (+)
rp9 rp9,LOC107653847,LOC107710715,LOC107556368,LOC107556335,LOC107670274 coding upstream 298150 26615144 ~ 26623597 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding downstream 175494 27307466 ~ 27331589 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 285601 27417573 ~ 27443050 (+)
casd1 casd1,LOC106570464,LOC107722141 coding downstream 319037 27451009 ~ 27466504 (+)
ppp1r9a ppp1r9a coding downstream 346764 27478736 ~ 27588721 (+)
trnai-uau_8 NA coding downstream 358071 27490043 ~ 27490136 (+)
G199965 NA non-coding upstream 132896 26784017 ~ 26788851 (+)
G199920 NA non-coding upstream 396371 26525135 ~ 26525376 (+)
G199910 NA non-coding upstream 423642 26497451 ~ 26498105 (+)
G199775 NA non-coding upstream 436179 26485236 ~ 26485568 (+)
G199767 NA non-coding upstream 579483 26334716 ~ 26342264 (+)
G200051 NA non-coding downstream 101509 27233481 ~ 27234147 (+)
G200102 NA non-coding downstream 147641 27279613 ~ 27279917 (+)
G200110 NA non-coding downstream 161707 27293679 ~ 27294340 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 200042 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 224748 27356720 ~ 27356941 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 29124 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 308559 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1301612 25617928 ~ 25620135 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 4052490 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 4698711 22219265 ~ 22223036 (+)
G200104 NA other downstream 152248 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 172549 27304521 ~ 27305586 (+)
dync1i1 dync1i1,LOC107731605 other downstream 502707 27634679 ~ 27740109 (+)
G200235 NA other downstream 683364 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 846310 27978282 ~ 27987895 (+)

Expression


Co-expression Network