LOC103023978 (LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154)


Basic Information

Item Value
gene id LOC103023978
gene name LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27307466 ~ 27331589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259806.2
catgcgcactgtggaGCAGCAGTGCACTACGAGCAGTGGTGCTGAGTGATCATGGCTGTGTGTGTAAGATCTCTGCATTATTCGGGTTTTAGCCGCCAGATCCTGAAGACCACTGCAGTGTTCAGTAAACGGCACATATCGGAGCGCGTGTCCTCTAAATCTGAGCCCCGCTCCGCCCCGCAGACTGCAGATCATGTCCTCTACACCCAGGAACACTTTGCCCTAAAGGACTCTCTGAGGAAGATCATTGATCAGGAGATCAACCCCTATGTGGACGAATGGGAGGAGAAGGGACAGTTTCCGGCTCACAGGATCTTTAAGATTCTCGGAAGTGCTGGCTTTTTGGGAGTCAACAAACCTGTGGAGTATGGAGGTTTGGGGCTGGACTTCAGCTACAGCGTGGCTGTGGCAGAGGAGCTGGGGAGCATCAACTGTGGAGGAATTCCCATGGCCATCGGGGTCCAGAGTGATATGGCTACCCCTGCTCTGGCCCGGTTTGGATCCGCAGAGCTGAAGAAAGAGTTCTTGCTTCCCTCCATAATGGGAGACAAAGTGGCTTGCCTGGGAGTGAGTGAAGTAGGCGCTGGTTCTGATGTGGCGAGCATTAAGACTAAGGCTGTGCGTAAAGGAGATGAGTTTGTCATTAACGGTGGAAAGATGTGGACCACCACTGGATCACAAGCAGACTGGATGTGTCTCCTGGCAAACACGAGCGATGGGCCTCCACATAAGAACAAATCCCTCATCTGCTTACCCATGGATCTACCTGGAATTCACATCGCCCGTAAGATTAATAAGCTGGGCATGTGGTCTTCAGATACAGCAGAGGTGTTCTTTGACGACGTCCGGGTTCCCTGTAAAAACGTCATTGGGGAAGAGGGAATGGGATTCACATACCAAATGCTCCAGTTCCAGGAAGAGCGCATGTGGGGAGTTGCAAATATTCTGACCACAATGGAGAAAATCATTCAGGAGACGATTAACTACACCCGACAGAGAAAGATCTTCCACCAGCCAGTGCTGCACCACCAGGTAGTGCATTTCAGGCTGGCAGAACTGCAGACTGAGATCGAGCTACTGCGTTCCCTCCTATACCGATGCACAGCTCTCTATATCAAGGGCAATGATGTGACAAAGTTGGCGTCCATGGCAAAGCTGAAGGGAGGTCGTCTGGCTCGGGAACTGGGGGACGGCTGCCTGCAGTACTGGGGAGGCATGGGCTTCACCAGTGATGTCCTGGTCAGCAGGTTCTATAGGGATTCCAGACTAATGTCGATTGGGGCAGGAGCAGATGAGGTCATGCTCTCAATCATCTGCAAGTACATGGACACCCTACCCAAGAAATAACAGCACTGAAGGAGCTGTGTATGCTGATTTATAACAAAGTGCACTTAACATAGGAAAAAGCTTGGAAATTTCAGAAGTTTCAGTATTGTTTTAAACATGCCTCTCCAACAGGGGCTACATTCAGgttcacattaccagactgAAATGATGCAAAAACCAAACTGAAGTTTTTGCCTTAATGTTACACAAATCAGATAATTTTTGAGCTGTGTGGACATGTTCGATCCAGTCTTTTCCAATTAGATTTGTTCACATGTGTGATGCTAGATTGGAAGTGTATCTGATTCGTGGGCATGTGtcataaattaacatttatattgGATTATAAGTGTTTAATACTGTTGGTTTTTGTCATCATCCGGCAATGTAGTAAAACTGCATAAATTTGCACAATATCAGTGTGCACGTGtggtgtttcagggacagatagGTTCACATTAAAGACAGAAACCAGGCATTTTTGTACTTATCAATATTAATTGTCCACGTAGACAAATATGATCTGAGCAAAAGtatcaaaaatattaattattgaaTGGTGCTTGAAATGTGAATGACCAGAATTCAGAATGGGAGACGAAGGGGACATAAAAAGAGGATTTCAATTAAAAAGTGTTCAGCTTAAGTTTAATGCCCATAAATCTATTGAACTTACTATAAGCTACAATCAGTTGATCTAAAACTGTAGTGTATGAACTTTTATATTTGTGGGTGTCTACATAGCTTTTAGCTTTGCTCACAAGCACTCTAAATTAATAAGGTATAGATGTTCTACTTTAAAACATAAATTCTGAACATGCTGATGTAAACACTTGTGTCCACTCTAAACCTCATTCATCACTCTGAGGGATAATATAAGCAACTCCACTACTTTAGCCAATTAATGGAATAATCCTTTTACTGGCATTGTGGATGCCTCCAAGGGGCAGCAAGGAAATatggacagttcttgttaaaacacatattaaatttgctttgatttttaataaataaaaaaaaaacatagatttaTCATGTTGCCTTAACAAAAGGTATTTCTCTACTTGATAAGCttgtaaatatactgattattgTAGTTTTCTTGTACTATCTGTAACTGAATGTATGATCTCACTTATTTTAcaagaaaaggaaaataattaataaacaaccATACACAAACA

Function

NR:

description
PREDICTED: probable acyl-CoA dehydrogenase 6

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K11731 atuD; citronellyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259806.2 True 2510 mRNA 0.43 9 27307466 27331589

Neighbor

gene id symbol gene type direction distance location
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding upstream 175494 26921747 ~ 27131972 (+)
hepacam2 NA coding upstream 391283 26899668 ~ 26916183 (+)
fam133b fam133b,LOC107712925 coding upstream 408019 26893847 ~ 26899447 (+)
rbm48 rbm48,LOC107722129,LOC107566766 coding upstream 529665 26774891 ~ 26777801 (+)
LOC103028188 elmo1,LOC108425788,LOC107556397,LOC107556334,LOC107710279,LOC107724338,LOC107702083,LOC108257187 coding upstream 560387 26627075 ~ 26747079 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding downstream 85984 27417573 ~ 27443050 (+)
casd1 casd1,LOC106570464,LOC107722141 coding downstream 119420 27451009 ~ 27466504 (+)
ppp1r9a ppp1r9a coding downstream 147147 27478736 ~ 27588721 (+)
trnai-uau_8 NA coding downstream 158454 27490043 ~ 27490136 (+)
trnai-uau_9 NA coding downstream 159348 27490937 ~ 27491030 (+)
G200110 NA non-coding upstream 13126 27293679 ~ 27294340 (+)
G200102 NA non-coding upstream 27549 27279613 ~ 27279917 (+)
G200051 NA non-coding upstream 73319 27233481 ~ 27234147 (+)
G199965 NA non-coding upstream 518615 26784017 ~ 26788851 (+)
G199920 NA non-coding upstream 782090 26525135 ~ 26525376 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding downstream 425 27332014 ~ 27335222 (+)
G200125 NA non-coding downstream 25131 27356720 ~ 27356941 (+)
G200143 NA non-coding downstream 113305 27444894 ~ 27445449 (+)
G200148 NA non-coding downstream 135771 27467360 ~ 27468802 (+)
G200158 NA non-coding downstream 180399 27511988 ~ 27515678 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1880 27304521 ~ 27305586 (+)
G200104 NA other upstream 22899 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 414843 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 694278 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1687331 25617928 ~ 25620135 (+)
dync1i1 dync1i1,LOC107731605 other downstream 303090 27634679 ~ 27740109 (+)
G200235 NA other downstream 483747 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 646693 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 861985 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 2196474 29528063 ~ 29568075 (+)

Expression


Co-expression Network