casd1 (casd1,LOC106570464,LOC107722141)


Basic Information

Item Value
gene id casd1
gene name casd1,LOC106570464,LOC107722141
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27451009 ~ 27466504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259808.3
CGCTCCGCGGAGTCCCCGCCAGCTCCGCCGCAGCACGTCTATCTGCTTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAGCCTAGGCAAACGGGAGATAAATCACTATTTCAGCATCAAAAATGCCAAATTACTCTCTGTGCTGGCTGTACTCGTCCTCACGGCTGTCCACTCCGCCTCTCGGTACTATGGAGGCAGGGACACCTGTGACTGGCTCCTATCCAGCGGACGTTTCTTAGGGGACAGTGTGTGGCAGCCATATGGCTGCATGATGCACAAATACAAAAGCATagAAGCAAAAACATGCCTCAACAATAAACGAATAGCATTTATTGGGGACTCCAGAATCCGGCAGCTCTTCTATTCTTTCATCAAAATTATCAACCCTGATATAAGAGAAGATGGGAACAAGCATGAAAACATTCCCTTTACAGATAGAGAGTCCTTGCTGAATGTGGACTTCTTGTGGTATGCAGAAGTGAATAATTCCATGAAAGAGCAGGTGACAGCTTGGACGGAGAGGCCTGCTACCAAACCAGATGTCATTGTCATCGGTGCTGCCACTTGGTCCATCAAACTGCACAGCGGCAGCAGTGAAACACTCCTTCAGTACAAAGCAAACCTCACATCTATAGCAGGACCACTGGAGAAACTAACTGAGCATAGTGAAGTCTATTGGGTTTTACAagATCCTGTGTATGAAGAGATTCTGAGTGAGAATCGTAAGATGATCACAAACGAGCAGATAgacctgtataatgctgcagcCGTCAGTGCTCTTAACAACAGCAAGAGGAACGCTAGGGGCAGGGTGAAGTTCCTAGAGGCCTCTCGACACGCTGCCATGGAAACCATCACTCTGTCACTGGATGGGCTGCACCTTCCCGAGAGCACGAGGAATGTGGGTGCCATGGTCCTGATGAACTCCATATGCAATAAAATCCTTAAGCCCATTGATGGCTCCTGCTGTCAGAATGTTCCTTCACTGAGTGTTCTACAGAAACTGGCTTCTGGACTCTTCTTAGTAGCTGGTGTCTGCTTGCTGGTCCTTCATGCGCTGGGCTACAGCAGACATACTAAGAGCAAGCCTGTATCTGATGTGGAGAGTGGCGAGGAGAAAAAGCCTCTCACTGCTGCAGTGCCGCTCAACCTGAAGGCAGCTACACAGTCAGTCTGCAAGATGGGTCTGATCATGCTCTACTTCTATCTGTGTGACCGAGCAGACATTTTTATGAAAGAGCAGAAGttctacacacactccaccttcTTCATTCCACTCATCTACATATTCGTCTTGGGGATCTTCTACAGTGAGAACAGCAAAGAGACCAAACTGCTGAACAGGGAGCAGACAGATGAATGGAAGGGCTGGATGCAGCTGGTCATCCTCATCTATCATATATCTGGAGCCAGTGCTTTTATACCTGTCTACATGCATATACGGGTCCTAGTGGCAGCTTATCTCTTCCAGACAGGATATGGCCACTTCTCCTTCTTCTGGTTAAAAGGGGACTTTGGACTATACAGAGTGTGCCAGGTTCTCTTCAGACTCAATTTCCTAGTGGTGGTGCTCTGCCTCGTCATGGACAGGCCATACCAGTTCTACTACTTTGTGCCTCTGGTTACGTTTTGGTTTGTGGTCATCTACGCCATAATGGCCATGTGGCCACAGATACTGCAGATGCAAGCTAATGGTAGTGGTTTCTGGCACCTGGCACttttattaaaactattatCGTTACTTATTTTCATTTGCTCCTTTGCATACTCCCAGGGATTCTTTGAGAGTATTTTCTCCACGTGGCCTATTTCAAAGCTCTTTGAGCTGCAAGGAAGCATCCATGAGTGGTGGTTCAGGTGGAAGCTTGATAGATTTgcTGTGATCAATGGGATGCTGTTTGCCTTCATTTACCTAGCATTGCAGAAATGCCAGATTCTGTCAGAGGGTAAAGGAGAGCCCCTGTTCTCTAACAGGATTTCCAATTGCCTGATCCTCATATCAGTCTTCTCTTTTATAACATACTCTGTATGGGCCAGTAGCTGTAAAAATAAGACTGAATGCAATGAGATGCATCCTTACATTTCAGTAGTGCAGATTCTGTCATTTGTTCTAATCAGGAACATTCCTGGTTATGCCCGTTCtttgtatagctcttttttcgCGTGGTTTGGAAAAATCTCGCTAGAGCTCTTTATCTGTCAGTACCACATATGGCTGGCGGCAGACACCAAGGGCATCCTGGTCCTGATTCCTGGGTACCCTTCTCtcaacatcatcatcagcaccttcatctttgtgtgtgtggctcaTGAAATCTCTCAAATCACCAATGACCTGGCCCAGGTAGCCATTCCTAAAGACAGTACAGCTCTGATGAAGAGGCTATTGGCTGCAGGGGTTTTCCTGGGGCTTGTGCTAGTTCTGTCTGTGAATGGGCAAGCTGGCTACTGAATGAGCTGGGGGACCACCGCCTACCTAGCTGCATGAAAGAACAAGCCGTGAATGAGCTGAGTAACTGGAGGAGGACACGTCAGGAATCTTTGAGCTTCAGGAATCTTCCAGGACTCTTTCTTCAGGCTTGTTGAGGGCAGTATGATGTAATAATGAATTCACACTCCGAGAGAGTTAACAGTTGGAGGAATGGCCCAAAGCAGAGGCCAGGGGCACAATGCAGTAAGGACATATATATAAAACGTTATAAAACTTTGTTTACAATGAACAGTTTTATATaggacgtgtgtgtgtggtggccATGAAGACATTTACCACATTGTGTCACGCTATACATACTGACTGAATGTACTGTACTGACATACATTTtgactgaaaaagaaaaaactaagacTGACGCtgacatttataaaatgtaagcCACCTGTTCTCCGTCCATGTCTTGTAGTActtgtttgcagtgtgtgtacagtatttaatgatttaaattatgtttactTTGTACATGGATGTATTTGTGTCACTTTCACCTTGTGtcttgatttatttttcttttttttattatttctttttttgtatccaTGACTGATGTAACTGAAATATGAACAgactttcatttttcatcttCTGCAGTAGACAATTCAGCATAAGCCAACTGCTTTGGCAACCTCCAGTTAACTCACTAACCAgcttattttagtaaaaaaaataaccactATAGTAAATGCTTTTTAGTGtttgtaacatttaataaaGGCTTTCAACGGTCCTCAATTCTCCAGAACTATCAACAAATACAGGACACTTTTATAGCTGTCAAAACAAGGACAGTGAAGAGGTCACTGCATGAACTTCTGGAAGACTGCATATGTATCTCAAGACCAGAAGAACAGTCTTTATTCTTTAGATGCTATTTATTGTAACACTCCAAAACTGAAAATTCTATAACCAAGAAACTTGGATCTACTGCTGTGCTCTAACCCCAGTGCTATGAAAGTTGTGAAGGTTGTCGTATAATGCAAGGAAAGGTTTCTGTTGATGATGCCTTTTATTTCCTTAAGAAAGGTCAAAAGGTTTTAAGCTTGACGGTTGCTTTGCTGATACTGATGTGTagcttttttgttaaaaaaaaacttttgtatgTTTTGCAGCTTTTAGCTTTCAGGGCTCAGTTTATCAAAATGCTCTGTTGTATTACGAACATCCTAACTGTGATAAACAGTTGTaatgatgagaaaaaaaaaatccagcttaGTATAACAAGCTGAACAAAGCAGTCTAACATTGTACATATCTTTATTTGCTGTCTGTTGTTGCATTGTGCAAGATAAGTTTAAACCTTTCTGCTTTAAAGCTGCACTgaatttatttctgtaaaaatatGCCTCCCCCagtaaggtctctgtaaaaacAGCTTTTGTGAGGTCTATAATGTGTTGTATACATTTGTATTTTTGAACCCTGCACAAGAGCAGCTAGCTGGTCATCCAGGAAAAACACATTATGTTGGTAGGCTAGCTCGTTAACTAGCTCATAACCAGCATGGCGTGTGGTTTCTCTGGATGACCAACTGGATTTTTTTAGTTGGGTAAACTTTGCTAAAAGCAAACATGATCTTCTGTAGAAATAAGTGTTTGATTTTCTAAAGTAGATGATTTTGCTTAATGCAAACGTCAATTTTAATTAGATGCAATGAATTCAATCCACTTCACTGCTATACTGAACCAACATTCATGTATCCTTCTGTAAatgtttggattttatttttttaagattttctgtatgtgtgtatgaatcAATTCTTTTTGTATAGTTTATttggtcttattttaaaaaaataagaagaaagaaaatcatACCCTCATGCCTCGACATAGAcccaatgtaaatatatttgttttgtccTGAAATGTGAAACCTATCTTGTCTGTCAATTAAGAAATGAGTTCTCTTGGTTGTGCAGTCATTAttggtataaaaaaaagcaactcCCTGAACTTATACAGaagaactgtatttttattagcaGGTTTGTATTATTTCCAGAC

Function

symbol description
casd1 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

NR:

description
CAS1 domain-containing protein 1-like isoform X3

GO: NA

KEGG:

id description
K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259808.3 True 4507 mRNA 0.42 18 27451009 27466504

Neighbor

gene id symbol gene type direction distance location
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding upstream 7959 27417573 ~ 27443050 (+)
LOC103023978 LOC108257226,LOC108425866,LOC107731711,LOC107669823,LOC107667771,LOC107558587,LOC107593525,LOC107722154 coding upstream 119420 27307466 ~ 27331589 (+)
vps50 vps50,si:ch211-287b5.1,LOC107669849,LOC107722151 coding upstream 319037 26921747 ~ 27131972 (+)
hepacam2 NA coding upstream 534826 26899668 ~ 26916183 (+)
fam133b fam133b,LOC107712925 coding upstream 551562 26893847 ~ 26899447 (+)
ppp1r9a ppp1r9a coding downstream 12232 27478736 ~ 27588721 (+)
trnai-uau_8 NA coding downstream 23539 27490043 ~ 27490136 (+)
trnai-uau_9 NA coding downstream 24433 27490937 ~ 27491030 (+)
asb4 asb4 coding downstream 129354 27595858 ~ 27602040 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding downstream 392620 27859124 ~ 27862168 (+)
G200143 NA non-coding upstream 5560 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 94068 27356720 ~ 27356941 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding upstream 115787 27332014 ~ 27335222 (+)
G200110 NA non-coding upstream 156669 27293679 ~ 27294340 (+)
G200102 NA non-coding upstream 171092 27279613 ~ 27279917 (+)
G200148 NA non-coding downstream 856 27467360 ~ 27468802 (+)
G200158 NA non-coding downstream 45484 27511988 ~ 27515678 (+)
G200166 NA non-coding downstream 139969 27606473 ~ 27609051 (+)
G200278 NA non-coding downstream 452951 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 537030 28003534 ~ 28003890 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 145423 27304521 ~ 27305586 (+)
G200104 NA other upstream 166442 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 558386 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 837821 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1830874 25617928 ~ 25620135 (+)
dync1i1 dync1i1,LOC107731605 other downstream 168175 27634679 ~ 27740109 (+)
G200235 NA other downstream 348832 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 511778 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 727070 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 2061559 29528063 ~ 29568075 (+)

Expression


Co-expression Network