asb4 (asb4)


Basic Information

Item Value
gene id asb4
gene name asb4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27595858 ~ 27602040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259817.3
AGTGTGAAGGAATTATGAAATTTTTGTGTCATCTGCCACAATCAATATTCAGAAAGGGatctgggctcttatgggttaataACTCAATCTTGCTTCCACACAGTGAAATTTACGCTAGTCCAGGAGGTGAAGTGTGAGTGTAAAGGTAGTCTGATCCACAGGGCTGTTGGTATGTGATGACTTCCCCCTGTCAGTCTATAAATATCTGCCCTCATTCGAGTCTCATTCGAGTATCCTTGTTTCACACCCTCGTCCTGTCTCTCTGCGGAATAGCCCACGCAGCTCATGCACAGCGGGAAATCACTGGAAACGCGCACAGAACTGTGGGCCTGCTcccctgagtgtgtgtgcatgtgtaggtgtgtgtgtgagagcttcagagtgtgtgtgagagatggaGGAGCGCGTGTCTCGGCGCTCTGAGGCTCTGAAGGAGCTGAAGTCGCGCTTTCTGGCGGCGCTGCAGCGCGACGACGCGGCGGAGGTGGGGAAACTGCTGCACACCACTAACATCGATATAGACACGGTGTTCGACGTGGAGGACCGCAGCATGGTGCTGGCCTCATACAAACAAGGATACTGGTTACCAGGCTACAAGCTGGAGTCTTCGTGGGCCATGGGTCTTCACGTGTGTATGATGTACAATTCGTTGGCGTGTGCTCTGGTGCTTCTGCAGAGTGGAGCAGCGCTGAACAGGAAGCCCAATGGGAAAACTCCACTTCACGTGGCCTGTGAGGTGTCTCACGCAGACTGTGTGAACCTGCTGCTGAACTGGGGGGCTAGGGTCAACAGTGTGTCACTGAGTGGGCACACTCCTCTACACTACTGCATCACTCACGAGTCTGTGGACTGCGCCAAGCAGCTCATCCTTAAAGGAGCAAATGTGAACACGGCCAGCGAGAACAATGAAGAAAACACTCCACTGCACACAGCTGCACGATTCGGCATCTCCGAGCTGGTGGCCCTCTATGCTGCTCATGGTGCTGAGGTGGATGCTCTAAACTCCCATTTTGAGACCCCCCTGATCACTGCTGCATTCTGGGCCAGACTCCGCGAGCAGACCTACAGCGAGGACCACCGCCTTGTGTGTCGGATCCTGCTGGACTACGGCGCCAACCCAAACCTTCAGGAGGAGGACAAGAAGACGGCCCTGCACAAAGCCTCTTGGAACTGTGACCCTATACTAATGCAGATTCTACTGGAAGGTGGGGCTGATGCCAGGATTATGGATGTGAACGGGTGTGCGGCGGTCCAGTACGTGTTGAAGTCCTTGCAGTTTCGGCCAATGTCTATACCTGAGCGCTGCTTCCAGCTTCTGCTGAACTATGGAGCAGCCAGAGTCTACCCTAAGCAGTTCCACAAGATATTGCAGAGTTGCTACGACTATCCCCGGGCTGTTGAGGTGATGGCCAATTCTTATGAGCATCTCATGAAAACCAAAAAATGGAGGGCAGCTATTCCTGACGCAGCATATGAGCGGTACAGGATGTTCTATGATTCCTTGTTCGCTGCTTGTACCAACAGTCCACGTACTTTGCAACACTTGGCCAGATGTGCCATACGTATGGCAATGTACAGACGCTGCGAGTCCGGCATTCATCAACTACCACTGCCCCCACCAGTCAAGAGATATATACTGCTGGAACCTGTGGGAATCGTATTCTAGACATTTTGCATTTTGGCTTTGAAATGCCGAAGTCTGCTGAACTCAAGCCTCTTTGTCTCAGTCAAATGTTCTGGGGCTTAACTGTTTTGAGCCTTCATTCCTCAGTCTCATTAGTGCAACTGGCTTATCAGTTTATATTATGAAGGTTACTGAATAATATAGCTAGAGTAtaaggaactgtgtgagaattcTGTCATAAAGAAGTTGACCTTTGTATGACATTGTATGACAGGATGGTCTGATGGAACCTCCTACCATTGTTCTTCCTGCTACCAGACaattcagaaaaataaatgtttccaTGTTTTTGAACTTGTT

Function

symbol description
asb4 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB4 (ankyrin repeat and SOCS box containing 4).

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 4 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10326 ASB4; ankyrin repeat and SOCS box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259817.3 True 1984 mRNA 0.50 6 27595858 27602040

Neighbor

gene id symbol gene type direction distance location
ppp1r9a ppp1r9a coding upstream 7137 27478736 ~ 27588721 (+)
trnai-uau_9 NA coding upstream 104828 27490937 ~ 27491030 (+)
trnai-uau_8 NA coding upstream 105722 27490043 ~ 27490136 (+)
casd1 casd1,LOC106570464,LOC107722141 coding upstream 129354 27451009 ~ 27466504 (+)
col1a2 col1a2,LOC107731699,LOC107591591,LOC107722140 coding upstream 152808 27417573 ~ 27443050 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding downstream 257084 27859124 ~ 27862168 (+)
ago2 ago2,LOC107722143,LOC107593532 coding downstream 271836 27873876 ~ 27893526 (+)
LOC103030526 LOC103030526 coding downstream 294084 27896124 ~ 27901307 (+)
LOC103030835 NA coding downstream 304141 27906181 ~ 27919226 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding downstream 331338 27933378 ~ 27967499 (+)
G200158 NA non-coding upstream 80180 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 127056 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 150409 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 238917 27356720 ~ 27356941 (+)
G200124 bet1,LOC107669829,LOC107722155 non-coding upstream 260636 27332014 ~ 27335222 (+)
G200166 NA non-coding downstream 4433 27606473 ~ 27609051 (+)
G200278 NA non-coding downstream 317415 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 401494 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 429811 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 460330 28062370 ~ 28081260 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 290272 27304521 ~ 27305586 (+)
G200104 NA other upstream 311291 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 703235 26831954 ~ 26892623 (+)
c23h18orf21 LOC103027551 other upstream 982670 26586239 ~ 26613188 (+)
ndufs5 ndufs5 other upstream 1975723 25617928 ~ 25620135 (+)
dync1i1 dync1i1,LOC107731605 other downstream 32639 27634679 ~ 27740109 (+)
G200235 NA other downstream 213296 27815336 ~ 27818650 (+)
LOC103032101 NA other downstream 376242 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 591534 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1926023 29528063 ~ 29568075 (+)

Expression


Co-expression Network