dlx6 (dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660)



Basic Information


Item Value
gene id dlx6
gene name dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27859124 ~ 27862168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007259826.3
AATTTGATGATGACCATGAGCACGATGGCTGACGGTCTGGAGGCTCAGGACTCGTCCAAATCGGCGTTCATGGAGTTTGGTCAGCAGCAGGCGCCCTCGCAGCAGAGCTCGCCGTCGGTGGGCGCCGGACACTACCCGCTGCACTGCCTGCACTCCGGCAcgcaccagcagcagcacgacggctctccctactcgggctcCGGCTCCTACAACCGCTCGCTCACCTACTCGTACATGAGCCACGCGCACCACAGCCCCTACCTGCCATCCTACCACAGTAACGCGGCCACGGCGCACACGAGGCTTGACGGCACAGAACAGcagaaaacaacagtaatcgaaAACGGAGAAATAAGGTTCAACGGCAAGGGCAAGAAGATTCGCAAACCGCGGACAATCTACTCTAGTTTGCAGCTGCAGGCTTTGAACCACCGCTTCCAGCAGACCCAGTATCTCGCATTGCCAGAGCGCGCGGAGCTCGCAGCCTCCCTCGgcctcacacagacacagGTAAAGATCTGGTTTCAGAACAAGAGATCGAAGTTCAAGAAGCTGCTGAAGCAAGGTAGCAACCCCCACGAGAGCGAGCCACTGCCTGGCTCCCTGGCGCTGTCCCCGCGCTCTCCGGCCATCCCGCCAATATGGGACGTGTCAGCTTCCTCCAAAGGCGCGAGCATGTCCGCCAACAGTTACATGCCCACTTACTCGCACTGGTACTCCTCTCCTCACCAGGACTCCATGCAGAGATAGGCTACGCGCAACCCGGCCAGGCCCCAGGCCCAGCGCACGTGCCCTCCTTCTTTAGTCCTACCTGAGCAGTGGTAGCCAAACGCTGCCATCATTGGAGGACTTCTCGTCTTGTTTCTGGAGAGCAGTTCTTCTGCTGGAGAACAAGCGGAGCAAAGATCTCGggactgaactgcttgaactgaCACGTCGCAGCCCgaacaggattttttttgctttgaaaaACATCCGCTGTTGTATCTGTTGACTCTTTTAACCAAGTGCGTCCATTCACCAGCATGGGGCAGGGGCTGGGACACCTTTCGCAAAGCTCCATGGGTCACTGCTGAAAAGgaacccaaataaaaataaaaaacgaaaaagaaaaaaagaaaaaatgcggTCTTTGCGTTATGACTACATGTTTTTCGTCATGCAAAAGAAGCAAttttgtatgtaaatatattgtccaattttagttgtaaaatactttttatgtttttgtcatAAATGGAGTAAACCATGGCTTCAAAAAA

Function


symbol description
dlx6 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryonic morphogenesis; positive regulation of epithelial cell proliferation; and roof of mouth development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
homeobox protein DLX-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007259826.3 True 1262 mRNA 0.53 3 27859124 27862168

Neighbor


gene id symbol gene type direction distance location
asb4 asb4 coding upstream 257084 27595858 ~ 27602040 (+)
ppp1r9a ppp1r9a coding upstream 270403 27478736 ~ 27588721 (+)
trnai-uau_9 NA coding upstream 368094 27490937 ~ 27491030 (+)
trnai-uau_8 NA coding upstream 368988 27490043 ~ 27490136 (+)
casd1 casd1,LOC106570464,LOC107722141 coding upstream 392620 27451009 ~ 27466504 (+)
ago2 ago2,LOC107722143,LOC107593532 coding downstream 11708 27873876 ~ 27893526 (+)
LOC103030526 LOC103030526 coding downstream 33956 27896124 ~ 27901307 (+)
LOC103030835 NA coding downstream 44013 27906181 ~ 27919226 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding downstream 71210 27933378 ~ 27967499 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 176580 28038748 ~ 28096817 (+)
G200166 NA non-coding upstream 250073 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 343446 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 390322 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 413675 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 502183 27356720 ~ 27356941 (+)
G200278 NA non-coding downstream 57287 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 141366 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 169683 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 200202 28062370 ~ 28081260 (+)
G200333 NA non-coding downstream 234834 28097002 ~ 28097344 (+)
G200235 NA other upstream 40474 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 119015 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 553538 27304521 ~ 27305586 (+)
G200104 NA other upstream 574557 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 966501 26831954 ~ 26892623 (+)
LOC103032101 NA other downstream 116114 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 331406 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1665895 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1680580 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 3147758 31009926 ~ 31084633 (+)

Expression



Co-expression Network