LOC103030526 (LOC103030526)


Basic Information

Item Value
gene id LOC103030526
gene name LOC103030526
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27896124 ~ 27901307 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259829.3
gAGAGCAGTTAGAGGAGTGAGTCAGATTTTCCACAGCTCAGTTACGATCCACACAGCTCCACAACAACACACAGGACCAGCCGAGCTCCCCTCTGTCACTGCACTGCAGTAGGATGGCCTGGGTTTGCTTGTCCAAATGGCTGCTCCTCCTGAGTGTGTGCTGCCTTGGATTGAGTGCGCTTCACTTGGTAGACAGTGACTGGGAGTGGGGCTCAGGCCTGGAGGAGCTTCTGCAGAGCTTCCCAGCGGACAGCCCCTTCATCACAGAGAAACCTGGACATCCTGCCAACTGCACACAGCGCTTCTGGCTGCCCTCGTCCACTCCTGTGTGCTGGGATAACATAGTGGGTCCTGAGGAGTTTGAGCAGACCCGGCTGCTGGTTCTGCAGAACCGTGCGGCTCTGCAGGCCGTTTCCCAGGCCAGCGGCCTAGAGGAGGGGGGAGCCTCCTATGATCAGCAGGCCAGGGAGTTCATCAGAGGGGTCCTGGATGACCACAGCAACATTGAGCAGACAGTAGACTCCATGCAGGAGGTCTTCAACAGCCTGGACAAGAAAAGGAAGGAGGGTGGACAACACTACACCTTCTCCAGtTTAAAGGAGCAGATTGCGAACAACATGGACTCAATCGTCGGCAGGGATGAAATCGCAGCTCTTCTGGAACAGCATATTTCTGATCTGGACCGAAGCCTGTGCACCATGCAGCACCAACTAGCCAGATTTGGTTTGAGGGATATATCAGGAGATGATCCATTTTTGAGATGTGCATGAAGAACTTTTTAACTGTTTGAAGAAGTGGATAACATGATTCGTTACCAATTTAAACATCTTTAATTTTGGATTTAATTTgaaattttaatgaaaaaaaaaacaagtgtatGCTAAAGGCAAAGCCACAGAACTTGTTCTAATTGGTCTAAAGTTGGTCTAACATTGTATGGTGTAACAATAATTGAGACAAACTGCAAAACAGTGAATATTCAAATAAAACTAACTTGTAATGAAAa
>XM_022683244.1
gAGAGCAGTTAGAGGAGTGAGTCAGATTTTCCACAGCTCAGTTACGATCCACACAGCTCCACAACAACACACAGGACCAGCCGAGCTCCCCTCTGTCACTGCACTGCAGTAGGATGGCCTGGGTTTGCTTGTCCAAATGGCTGCTCCTCCTGAGTGTGTGCTGCCTTGGATTGAGTGCGCTTCACTTGGTAGACAGTGACTGGGAGTGGGGCTCAGGCCTGGAGGAGCTTCTGCAGAGCTTCCCAGCGGACAGCCCCTTCATCACAGAGAAACCTGGACATCCTGCCAACTGCACACAGCGCTTCTGGCTGCCCTCGTCCACTCCTGTGTGCTGGGATAACATAGTGGGTCCTGAGGAGTTTGAGCAGACCCGGCTGCTGGTTCTGCAGAACCGTGCGGCTCTGCAGGCCGTTTCCCAGGCCAGCGGCCTAGAGGAGGGGGGAGCCTCCTATGATCAGCAGGCCAGGGAGTTCATCAGAGGGGTCCTGGATGACCACAGCAACATTGAGCAGACAGTAGACTCCATGCAGGAGGTCTTCAACAGCCTGGACAAGAAAAGGAAGGAGGGTGGACAACACTACACCTTCTCCAGgtctTGAAGCTTACCAGAACTAAGTAAACTTCTAAAGAAACTGTTTTGGAGCCCACCCGCACGGCTGAATTCCATGAGAATGATGTAACATGTGGAAAAGACACGTCAGCTCTTGTCCCTCTGCATGATTAAGAGTGTTGTTAAAAAGGGAGtactttattacacacacatcttACATCTCCAGTGTTCACTACACCAATGCATATTGTGTCTTTAGCTTCTTAAGTGCAGAAAGCACagcttattaatttattcagtaaAAGGCAATCCAAACTTTTGTTAAGTTTTGTCATGTACTGATCTGCAGTTTTAATCAAACACTGCTACAATTTCtgatttatgaaaataaaagatattttctttttct

Function

NR:

description
uncharacterized protein LOC103030526 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259829.3 True 1006 mRNA 0.48 3 27896124 27901307
XM_022683244.1 False 959 mRNA 0.49 3 27896124 27900887

Neighbor

gene id symbol gene type direction distance location
ago2 ago2,LOC107722143,LOC107593532 coding upstream 2598 27873876 ~ 27893526 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding upstream 33956 27859124 ~ 27862168 (+)
asb4 asb4 coding upstream 294084 27595858 ~ 27602040 (+)
ppp1r9a ppp1r9a coding upstream 307403 27478736 ~ 27588721 (+)
LOC103030835 NA coding downstream 4874 27906181 ~ 27919226 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding downstream 32071 27933378 ~ 27967499 (+)
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding downstream 137441 28038748 ~ 28096817 (+)
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding downstream 229160 28130467 ~ 28176690 (+)
LOC103025163 NA coding downstream 455233 28356540 ~ 28369342 (+)
G200166 NA non-coding upstream 287073 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 380446 27511988 ~ 27515678 (+)
G200148 NA non-coding upstream 427322 27467360 ~ 27468802 (+)
G200143 NA non-coding upstream 450675 27444894 ~ 27445449 (+)
G200125 NA non-coding upstream 539183 27356720 ~ 27356941 (+)
G200278 NA non-coding downstream 18148 27919455 ~ 27919995 (+)
G200317 NA non-coding downstream 102227 28003534 ~ 28003890 (+)
G200327 NA non-coding downstream 130544 28031851 ~ 28032098 (+)
G200332 NA non-coding downstream 161063 28062370 ~ 28081260 (+)
G200333 NA non-coding downstream 195695 28097002 ~ 28097344 (+)
G200235 NA other upstream 77474 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 156015 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 590538 27304521 ~ 27305586 (+)
G200104 NA other upstream 611557 27284220 ~ 27284567 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other upstream 1003501 26831954 ~ 26892623 (+)
LOC103032101 NA other downstream 76975 27978282 ~ 27987895 (+)
G200341 LOC108426039 other downstream 292267 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1626756 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1641441 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 3108619 31009926 ~ 31084633 (+)

Expression


Co-expression Network