LOC103032937 (gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601)


Basic Information

Item Value
gene id LOC103032937
gene name gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28038748 ~ 28096817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259838.3
actatATTTTGTAAGAAATTATTGCATTGCAataaatttacatatatatatttttttcgattTGTCGATAATTATATGTGCGTTATCCGCTTTAATGTCAAGATTAACGACGATATCTGCGATTCATTGTAGTTACAGTTCATAGATTTCTAGGGGAAACATAGCGTTAGCTATAGTGTTATGATAGGATAGCTAATCTGCCACGCTCATCGTTTTTGAACCAGCCTAGCTACTACCAAGTTCACGGCGATCTAATCTCTAACAACACTCGTCCCTTTGTAACTAGCAAGACGTTTATTAGACGGCTGTGAAAAGCGTAGCCTGTAGGTCGGGATGCCGGACAAGGTTCTCAAAACGCTGAAATAAATAATCCTTAAAGCGCCTGAGTCGATCAGCCGTGATGGCGTGGAGAACGGAGTTAATATGGCTGTCCCCAATTTATCTGCTGCCCATGTAGTAAAGTAGCTTCTTCgccttgtgctgctgctgctgctgctgacacGACGCGCATAACAAGCCGTTTAGTTTCCCATCATTTTCAGAGCTCCTTGTCCCCTCCCCTCCAGACACAGACAACAACATACACCTTAATAGGGGCGCGTCTCCGACACAGCCGCCGACCAATAACCCGTCTGTCTGGGCAGAGACCGAGGGGGATGAGCGCCTGTCGAGGCCCAATCAGCGCCTTTGTGTTGCCTGCCGGTGCCGGGGACTGGTCGTGAGGAGCTACTGCGGCGCTTCGGGATCGGCGAGTGAACCCGGATCCAGAGCAACCTGAAGGGCGAAGGCGAGTCAGGATGGAGCGGATGTCTGAGGAGGCGTTGCGGTTGAACCTGCTCAAGCGGGGTTTGGAGACAGCGGACGAGAGGGAGGAGGCTCTGGCCAAGCGTCTGAAGATGGAGGGTCATGAGGCCATGGAGAGGCTGAAGATGCTGGCCCTGCTCAAGCGGAAAGACTTGGCTGCCCTAGAAGGCGCTGCTATGGCAGCGGCCATGGCCGAGGGCAAAGGCCCGGGAGGCAGCCAGGGACTTATGGGGGCCTCTGCCTACGAGGAGAAGCTGAATGGCAGCATGAGGGTGGTAAGCCACGGAGGGCCCAGCAAGAACGGCAAAGAGAACATGATGGACGAACCTGTAGATATGAGCGCAAAGAGGAGCGATGTTGATCGAGAGAGACGCACTCCATCTCCAGACGTGATCATCCTGTCAGATAACGAGGCGTCAAGCCCACGCAGCACCCCGCACCCAGAAGAGCGGCACCACCGCCCCAACCTGGAGATGTTTAAGgggaAGACAGGtgaggagaggcagcagatgaTCAAAGCGCTGCGtgaggagctgaggctggaggaGGCCAGGCTGGTGCTGCTGAAGAAGCTGAGACAGAGCCAGATGCAGAAAGAGAACGTGGTGCAGAAGgTTCCAGTGGTCCAGAACACCCCCTCCTCTGTTCAACCCTCTCCCATCCACAGCTCACAGGGGTTGACTAAGCTGCCCGTTCGACCGGGCATGCACACATCTGAGCCCCAGAACCTCCGCGCtgcacagGGCCACACGGTGATCAGGTCCGCTGCCAGTGCCTCCCTGCCCCCGATGATGATGTCCCAGCGGGTGATCGCCCCTAACCCAGCCCAGCTGCAGGGTCAGAGAGTGCCCTCTAAGCCTGGCATGGGCCGATCCTCCACAGGAAGTATGGGCAATGCAGTCAACTACCAGCAGGCTGCCAGCCAGCAGGTGGCGGCCTCCCAGCGCTCCAACTCCTCCACGGCCATCTACATGAACTTGGCCCACATGCAGGCGGCGGGGGTGCCAGGTGTCGGGGTGGGTGTGAGCGGGGTGGGGGCGGTCAGCCCCTCCACACTGCCTAGCGGGTCTAGCGTGGCCGCTGTGGGCAGCGTGAGCTCACTGAACGACCAGGCCAGCAGCCAAGCGGCTGCCAAACTGGCCCTACGCAAGCAGCTGGAGAAAACCCTGCTGGAGATCCCACCACCCAAACCCCCCGCCCCCCTGCTCCACTTCCTGCCCTCAGCCGCCAACAGCGAGTTCATCTACATGGTGGGGTTGGAAGAGGTGGTGCAGAGTGTCATCGACAGCCAGGGTAAAATGAGGGGTTCACTCTCCCGCTTGgagccgtttttctgcgctcaGTGCAGAACAGACTTCACCCCCCACTGGAAGCAGGAGAAAAGCGGACGCATTCTGTGCGAACAGTGTATGACCTCCAATCAGAAGAAGGCCCTGAAGGCCGAGCACACCAACCGGCTGAAGAACGCTTTTGTCAAGGCCCTGCAGCAGGAGCAGgagatcgagcagaggctgcagcagcaGGCAGCTTTGTCCCCGAGTGCAGCTCAGACTGTGCCCAGCGTCAGCAAGGCTGAGAGTATGATCAGACACCATGCCCTCCGACAGGCGCCTCAGCCACAGGCTGCCCTGCAGCGAGGTCTGTCCAGCTCAGCGCGGGGCGTGCTCTCTAACTTTGCCCAGGCCTCCCAGCTATCAGTGGCCAGTGGTCTGTTGGGCATGACCAGCAAGCGCTGCGGAGGGGGCAGTAGCAGTCGGCCGCAGCACGAAAGCCGCCGGCAAATCTACAACATCCCTGGACTGAATATTGCCTATTTGAACCCTGGAGCCGTGGGAGGCCACAAGGCATCCAGTCTAGCAGACCGACAGAGGGAGTACCTGCTGGACATGATCCCCCCTCGCTCCATATCTCAGTCCATCACCGGCCAGAAATGAGCTCCAGCAGACCGACGAGCCCCTTCTGGACACCCCTTCACTCCTAAATCCcccacacactcttacacacgcacacacatacatgcacttcacacacacacacacacacacatacacaaaaatacacacatacacacacagagaaatacACACAGCAACCATCACCCCCGTCGCATGCAGTGCCTGTCCGTGTGCCTACCCAACTAACCCATGAGAACGACTCAGACGCCAGATGATGAACAACAGACTGTCAGTGCATCTCGACTTCAGTTTCCTACTATAGCAAAGCTCTTTATTTCAACTTATTATTGCTGTTGTTATTGCTctgtctattattattattattacttctgTTGCAGGTATTCTTATTATGATTATTAGTATTCTTAGtgacttgttttgttttttttattttctttttttcttgcatattttatttatttcttttgtgaGGGAGGAGGCTAGATGCCAGGGTCACTTGAAAACGGTTGctcttctgttgttttttttcttccttctgAGCTTCCTCCCTTTTGCACCCTGTAAAATGATGAGAGTTAACTCTCTCATGACGAaagctcttctttttctttgatTGTTTATTCCCTCACTGAAGCTTACATCTACGGCTAAGCTTTCAGAATGAGAACATTTCGGCTATGCCATCTGGAAAGTCCAGAGTCTTTGTAGCAAATGTATTTAACTACCAGTCCTTTAAGGAAAGAGCCTTGGTGGAGACTGGGTTTCCGACTTTTCTGGTAGACTGATCCTAATGCACTGAGACGCTGATTTGACAGTTTCTTTGCCTTGAGAAGGCCACACAGTATCGTGAGAACACTAGGAGAATCTGCAGACTCGCTCATGGATGATGACACTGATGTTGAAGGATGTTCTGGCCTGTATCTTGTACTGCACACAGGAGGGGGCGGGAGCGTGGTTCTGATGAGGGCGTTGCCACTGAATTTATAGAATCTGCAGCAAATTTTGAAACCCATCCCTGTTTAATCCTGCCATGGATGGTCTTCCCCCAAATCAATGCCTACGCTTTCACCGGACACCGTGGCGCCAATGCTCTGAGAACGGCTTCCCCTTGTGGTGCCACATGATTGGCTGTGTAAGAAGGGATTTAGAATTCCATTATCACCATGAACTTTATTACTCCCCTTTGAGTTTCAGTTctactttattttctatttttatttgttacattttagtttttttgttttctcttttcctttttggCGGCGTCTCTTGCTGAAACGGTTGCGTATCTGAAAGGTACTTACCACAGGAGACGATAATCATGGAAAAACTAAAGCAGACGGAAACTATTCAAATATCTATAAGGTTTATGTATAGATTCTTAGCATGAGAGAAGGTTTAAGAGAAGGAGATGCATATATCTATAGTGGCATAGGCAAAGGATCAATCAGCGTGTTAGGGCAATGCACGCAAGGTGCCTCGTTCTCCAGGAGCACTTTTGTTGTTTAGAAGAATGAGGGGGAAAATGGGAAGCGGGGTGGGGCGGGTGGGATAATATGGTTAGAAACAGGACAAGAATGTTACAGCTGCCAGGCTCTTGAAGGTATGGATGGCACCACACTgtctgagagagacagaacagacagagaccagagagacagagagagaccaCATTGCATGTTTTCCAGAGAATCTTGTGCTAGAGAAACACTTGTGGTTATCCATGGTCAGTGTTCGCTGCTCTGCCCCCTAGTGGAAGCCTGCAGTAACTTGTGTAGGTAGTACATAAGCAAGTATGTGAACAGTTACGTTCACTACGCAGCACGAATATCTCTAACCATAGACTTGCTGTTTCTGTTAAATCATGATCAAGGATTTGAGcccaaaatagtaaaaatgttGAGAAAAGGACATTTCTGTTACAGTGCAGTGACTCTCTCTCAGTGGACAACCGTCCTGTTACTATATTCctgtttccttcttttttttttttcagatggcAGTTTGGGCAGTATGTAATGTGTTGCGTAAggtgtagcagcagcagcagcagtgtttggTCAGTATGCAGTATTAGCAGTTGGATTGGCTGTAATATATGAATAGGGCCCTGTGATTTCTGCATGTATGTACAGGACAGAAATGAAAAATTAACAATTctgaaaaaagaatgaaagctgaattttggggaaaaattaaacatttattttatagggTACTAAATATAGTTAGACAGAAATCcacaattgtatttattttttaagtttgtttttttagggtGGTAGACAGCATTTAAGCCACTTGACTTTGCCCTCACTCTCCTATTAAATTAGCACTTGACACAAATGCTGTATTACAGCAGTATGTATCGATTTTACAGGAAAGTGGCAGTCATTAGATTAAAAGTTGTCCGATTCCCAGAATTTTGTAGCCACAGCACTCAAATTTAGGCACTTACCTCAACCATTCCCAACCAGATTGTTTCATTTAGGCATTGGACTCTGAGGTCAGCATGCAGGTCAAGCACAGCATGAGGGCTTTCTGCTGAAGCACTCCCGCTTCACACGTTTCCTGAAAGAGGCAAAACATGTAGAGTCAGTGCACCGGTCAGTGCAGGTGTACTgctgtggtttggtttggacgGAGCGATGCAACTTTTAAACAAATCATGGAAACTACCTTTGGCTTTGATTCGCAGGTGCAATATTAGATGGTAGAAAGTTTACACTTGTGTTTATACTGTCTTTGAATCAGCCCCCttttattaaaatgcttttgcgttttttttcccctccttctTTTACCTACCATCATTTttatgattcatttttttttaactataattctgtttttggtgtgtttttttttttttttaatacattctcTTATTAAAGCAAATGCAGGACGTGTATAGTcagtccccctctctctctctctctcccctctacTCTCTCTGCCAGACTGTAATGGATGCATCCATATACCTTTGATATCTACCAGTTGGACTTATAAAATGAAATGTCATTTTCTAGACTTTTGAAGTATTACACTTCCTTTGATGACTCCTCTACGTTTGGTTTGCAGATTTCATTTCTGATATTTcttatgggaaaaaaaaaatcaagttaaatcaaactaaaaaaaaaatgaactatgAGATGACAAACACAATACTTGCTAGGTCAGAAGTAATAATGACTTATTGTACATacgctttttttcttttctttttttttttggtcccttgaatttaaaaaatgaaatgaaattaaaatggtTGTAAATTGTGtagaaaagcaaacaaaaagccATGAATATTGTGAAGCTTGTCATTTTGTTTTGTGATCACTGTGTAATATTGTGTAACAAATGTGCAAAATGTACGGGATTATActtctcttgttttttgtgaatgAGCTCTTTTTCGATGCATTTTTCTCCctggctgtatgtttttgtagtatgtagtatttgcaaaaggaaagaagaaaaagatttTGTCCTGGTGGAGCGTTTGATCCATTCTGCAGTCTTTGGGCTGGGACTTTAATGGGATATTCTTGTATATGtcactttttgtgtgtgttgctgatttttatttgattctttTGTCGATAACATTGAAGTTAAACCAATGTTCAGTGAAATACATTGATTTCTCCAGATGTCCCACGTGGACTGTCCGCCTCACAAGGCTCAGAGTGGATCAGACATTTGACAGTATTACCCCACACCTGACCAAATCCAAAGCACTCACCTGTAGAGGCGAAATCCGGCGATGCGCACATTTACCTACCTTCAGTTGTTCAGTTTGAGTTGAATTACAGGGTGTCATTGACCCTTTTGGGAGACTGtcaattctcattttctatttACTCATGATTATATAAAGCTTTCTtcagtagatttaagtatgccTCTTATTCATGTTTTCCCCTAGTGGGGAACTTTTGCAATgctcttattttgttttccaTGGAGAGTTGTATACATTGTATACGTCCATGTTTTATGGAgaacttgtgttttttttttttttactgttctgaTGCgtactgctttcagtttagtaaAATCTTAAGATTAAAAAAGTGGGACTattttgcacactttttaaGTATTGAATATAAAGATTGTGACATTTCTTAGATATTCGTTCACATTTCATTGTCATGGAGTAACTGTCCATAATTCTCTGATTGGACAATCAGCTTTTCTGGAGACAAGCGTTTTAGCACTGGGGTTTATGTCTCTCCACCACGTGATGTCACTCTAGttttaaaattctttattttatattttttgtcctTGTTCTTTTACTGCTAAGACTTTTTGTTTTTCCTGATTTCTTGTTAATTGTTGCAAAATACAGGTCATTTTTGTTGAAGTGGGAGATGGGCTTGGATcatattttctttgattttaaatttttttcaacttttgaATCTTTTGTAAACAGGACTTGGCTGCAATCCACCAGTTTGAATATTCAAAACACTTGGCAATatgtaaatcttttttgttaaaagaaaaaaaaaaatgtgattaagttttaaaaagaacaaCTGGGCTTGGGATTGGCTTAAAATGGTAATGAATTTGAAGCAAagctaaaaatgtgttttttgtcaagttctttttttttttcatttttttttcatttggaaCATTTAATCCAGACCTTTTGCACATCCTTGATATTTAACTGTCAAAAAAATGGAGATGAAAAAAAACGCTGTTTGATTACTGCCGGTTGATTAACAACAATTATGCattgactgaaaaaaataagctaATTTTGGAGGAAATAactttgtaatatttatctctTGCAAGCTATGTTTAATAAAGGATGGAACAGTTTA

Function

symbol description
gatad2b Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 18. Orthologous to human GATAD2B (GATA zinc finger domain containing 2B).

NR:

description
PREDICTED: transcriptional repressor p66-beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23194 GATAD2; transcriptional repressor p66

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259838.3 True 7585 mRNA 0.45 11 28038748 28096817

Neighbor

gene id symbol gene type direction distance location
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 71249 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 119522 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 137441 27896124 ~ 27901307 (+)
ago2 ago2,LOC107722143,LOC107593532 coding upstream 145222 27873876 ~ 27893526 (+)
dlx6 dlx6,LOC107722133,LOC107670195,LOC107665661,LOC107731570,LOC107665660 coding upstream 176580 27859124 ~ 27862168 (+)
tinagl1 tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600 coding downstream 33650 28130467 ~ 28176690 (+)
LOC103025163 NA coding downstream 259723 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 274399 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 319699 28416516 ~ 28506486 (+)
jtb jtb coding downstream 411320 28508137 ~ 28513587 (+)
G200327 NA non-coding upstream 6650 28031851 ~ 28032098 (+)
G200317 NA non-coding upstream 34858 28003534 ~ 28003890 (+)
G200278 NA non-coding upstream 118753 27919455 ~ 27919995 (+)
G200166 NA non-coding upstream 429697 27606473 ~ 27609051 (+)
G200158 NA non-coding upstream 523070 27511988 ~ 27515678 (+)
G200333 NA non-coding downstream 185 28097002 ~ 28097344 (+)
G200334 NA non-coding downstream 6156 28102973 ~ 28103203 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding downstream 115035 28211852 ~ 28214348 (+)
G200371 NA non-coding downstream 296302 28393119 ~ 28394226 (+)
G200389 NA non-coding downstream 503540 28600357 ~ 28602142 (+)
LOC103032101 NA other upstream 50853 27978282 ~ 27987895 (+)
G200235 NA other upstream 220098 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 298639 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 733162 27304521 ~ 27305586 (+)
G200104 NA other upstream 754181 27284220 ~ 27284567 (+)
G200341 LOC108426039 other downstream 96757 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1431246 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1445931 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2913109 31009926 ~ 31084633 (+)
G201018 NA other downstream 2915894 31012711 ~ 31015045 (+)

Expression


Co-expression Network