LOC103032568


Basic Information

Item Value
gene id LOC103032568
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15857116 ~ 15859664 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602024.2
CTCTGGGCTTTCTCAAGTGAGAAAACTTCATGGTTTCTTCCTCGTTGTCTCCAGCGCTTTGGGTGACATCACATCAGTGGAGTTTCCCCTGTACTTCTGTTTAAATGAACTTGCTCGCAGCAGAGGAAGCAGAACACCGGCATCGGCcgacatacacagacacaccacacCACCGCTCAACTGATAAGCAAGAATACGGTCTGAGAGCAGAGTGGAGATTactacagcaacttttagagcAATTTCAACAGCAACTTACAACCTTCAAACAATAGAGAAGACCCGGCCTTGGACTACTTTTCTCGAAGGAACTACCTACTCAAGATCTCTACAATGACCAGTCAAAATCAAGTCATTTTAGATGTGGACCCAGCCCAGGTGATTGTCAGCAGAACAAAGGCTTCTACAGCATGGTCGAGCAGATGGAAGCTGTGTATGGCTCTTCTGGCTATAGCTGTGTGCGCTGCTGGTGCTGTCTTCTTTACCTTCAACAAGACCAATAACAAGCCAGACAGTACTGATGATATCAGACACACACTAAGGCAAGTGTCCAACAGTGCAACAGGAGCCATTCACTTGTCAGGTCACTACAACCCAAATGTGTCCAACACATCTGTGGAGTGGACGGATAGCGAGGACCAGTCATTCAGCAGTGGAGGCCTGGTGCTAAAGAACAACGAAATCCACATCCCACACAATGGCCTTTACTTCGTCTACAGCCAAGCGTCCTACAGGGTCAACTGCAACTTGAAGACAGGTGAAAGCGAAGATGAGTCGGCTGTGCACCTGAGTCACATGGTGTCCCGCTGGTCCAACTCATACCCCAAATACCAGCCTCTGCTGAGCACCGTGAGAACAGCCTGCAGGAAAATCCACTCCAGTGAAGACTCCGGGGAGCAGTGGTTCAGCGCCGTCTACGTTGGAGCCATCTTTAAGCTGGAGGCTGGAGACCGACTCTGCACAGACATGGACTCCAAAATGCTGCCAGAAGTGGAGACTGAGAGTGGGAAGACATTTTTTGGCGTGTTTTCTTTGTGAGggtggactggactggactggagaaTGGACTGAAAAGATGATAAAAAACCAAGTGCCTTTTTTATGGTACCCCTGTGAACTGGAGTTTTCAGTCATTATATGTACACTATTCCCTTAGTGACATTAGACAGTGTAACTTACTACCTGTCTTTACAGAATAAGGAAATGTTCAgagtatatttgtt

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03156 TNF, TNFA; tumor necrosis factor superfamily, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602024.2 True 1223 mRNA 0.48 4 15857116 15859664

Neighbor

gene id symbol gene type direction distance location
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 56883 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 104176 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 110071 15736537 ~ 15747045 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding upstream 147665 15699725 ~ 15709451 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 161617 15666638 ~ 15695499 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding downstream 369843 16229507 ~ 16254632 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 739623 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 835932 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 1435227 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 2075029 17934693 ~ 18062867 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding upstream 14359 15821478 ~ 15842757 (+)
G197747 NA non-coding upstream 463438 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 501879 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 1065906 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 1071376 14785121 ~ 14785740 (+)
G197879 NA non-coding downstream 285847 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 286821 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 329248 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 366903 16226567 ~ 16228218 (+)
G197892 NA non-coding downstream 380926 16240590 ~ 16314252 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 67262 15761923 ~ 15789854 (+)
G197665 NA other upstream 1060388 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1388234 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1564048 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2494458 13324386 ~ 13362658 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 462278 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 485453 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 529144 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 564953 16424617 ~ 16430534 (+)
G198344 NA other downstream 2524963 18384627 ~ 18385072 (+)

Expression


Co-expression Network