LOC103044302 (eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444)


Basic Information

Item Value
gene id LOC103044302
gene name eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29500361 ~ 29507353 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604893.2
CCCTCCTTTTGAGCAGGGTTGGTATAAATATCTAGGGCTGGTGTAAGTCGTTCCTTTTTCTCCGGCAACGTTGGGGGGTCTGAGCTGTCCTTGCTGATCTTTGTAAATCGCCTCCAGAATGGGAAAGGAAAAAACCCACATCAACATCGTGGTTATCGGCCATGTCGACTCCGGCAAGTCCACCACCACCGGCCACCTGATCTACAAGTGCGGAGGCATCGACAAGAGAACCATTGAGAAGTTCGAGAAGGAGGCAGCTGAGATGGGCAAAGGCTCCTTCAAGTATGCCTGGGTTCTGGACAAACTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTTCTCTGTGGAAATTCGAGACCAGCAAGTACTACATCACCATCATTGATGCCCCTGGACACAGAGACTTCATCAAGAACATGATCACTGGTACTTCACAGGCTGACTGTGCTGTGCTGATTGttgctgctggtgttggtgaGTTTGAGGCTGGTATCTCCAAGAATGGACAGACCCGTGAACACGCCCTCCTGGCTTTCACCCTGGGAGTGAAGCAGCTTATCGTTGGAGTCAACAAGATGGATTCCACCGAGCCCCCATACAGCCAGAAGCGTTTTGAGGAAATCACAAAGGAAGTCAGCGCTTACATCAAGAAGATTGGCTACAACCCTGCCACCGTTGCTTTCGTCCCAATTTCTGGCTGGCACGGAGACAACATGCTGGAGCCCAGCTCAAACATGGGTTGGTTCAAGGGATGGAAGATTGAGCGCAAAGAGGGTGGTAGCAGTGGTACCACTCTTCTGGAAGCCCTCGACTCCATCCTGCCCCCCACCCGTCCCACCGACAAGCCCCTTCGCCTGCCCCTGCAGGACGTCTACAAGATTGGAGGTATTGGAACTGTACCCGTGGGCCGTGTGGAGACTGGTGTCCTCAAGCCTGGCATGGTTGTCACCTTTGCCCCCGTCGCTGTGACCACTGAGGTCAAGTCTGTGGAGATGCACCACGAGTCTCTTGCTGAGGCTTTGCCTGGTGACAACGTTGGCTTTAACGTGAAGAACGTGTCAGTAAAGGAAATCCGTCGTGGTAACGTGGCTGGAGACAGCAAGAACGACCCACCCATGGAGGCTGGCAACTTTACCGCTCAGGTCATCATCCTGAACCACCCTGGTCAGATCTCTCAGGGCTATGCTCCAGTGCTGGATTGCCACACTGCTCACATTGCCTGCAAGTTCGCCGAGCTCAAGGAGAAGATCGACCGTCGTTCTGGCAAGAAGCTTGAGGACAACCCCAAGAACCTCAAGTCTGGAGATGCTGCCATCATCACCATGATCCCTGGCAAGCCCATGTGTGTGGAGAGCTTCTCACAGTACCCACCTCTGGGCCGTTTTGCCGTACGTGACATGAGACAGACTGTTGCTGTCGGTGTCATCAAGGCTGTTGACAAGAAAGCCGCCACCACTGGCAAAGTGACCAAGTCTGCTCAGAAGGCCGCCAAAAGCAAATGAACCCTCCCCACGGGCACCCAACAAGGCGTGCTCACCACTTCATATTCTGCAATGTCTCAGAGCCTGAACTCACTTCTTAAGGACTGGCTAATGCTGATAAAAACCCATCGCAAAAGCTTCCGCAGGAAAGGAGGGAATCACCTTTTTCTAAGCACCTTAGGAGACAATtaggacaaaaaataaaaagatatcaTGAATTA

Function

symbol description
eef1a1l2 Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation.

NR:

description
elongation factor 1-alpha-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604893.2 True 1707 mRNA 0.53 8 29500361 29507353

Neighbor

gene id symbol gene type direction distance location
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding upstream 258 29496100 ~ 29500103 (+)
LOC103043706 NA coding upstream 16620 29479125 ~ 29483741 (+)
LOC103042153 LOC108426616 coding upstream 22102 29468749 ~ 29478259 (+)
cap1 cap1,LOC107706206,LOC107697048 coding upstream 39730 29449616 ~ 29460631 (+)
kiaa0319l kiaa0319l,LOC106511748 coding upstream 53152 29423417 ~ 29447209 (+)
LOC103045125 NA coding downstream 4350 29511703 ~ 29517460 (+)
rpl11 rpl11 coding downstream 12180 29519533 ~ 29523870 (+)
pithd1 pithd1,LOC107654704 coding downstream 46883 29554236 ~ 29557533 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding downstream 62725 29570078 ~ 29600164 (+)
gatad1 gatad1,LOC102800149 coding downstream 94514 29601867 ~ 29604753 (+)
G200785 NA non-coding upstream 14675 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 32834 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 481264 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 718327 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 762035 28736851 ~ 28738326 (+)
G200799 NA non-coding downstream 85667 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 128768 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 167433 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 366157 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 842012 30349365 ~ 30393273 (+)
G200341 LOC108426039 other upstream 1304163 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1512466 27978282 ~ 27987895 (+)
G200235 NA other upstream 1681711 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1760252 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 2194775 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 20710 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 35395 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1502573 31009926 ~ 31084633 (+)
G201018 NA other downstream 1505358 31012711 ~ 31015045 (+)
G201207 NA other downstream 2434849 31942202 ~ 31987057 (+)

Expression


Co-expression Network