aard (LOC108424810)


Basic Information

Item Value
gene id aard
gene name LOC108424810
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 30978750 ~ 30985844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604911.2
cacacaatgcTACTCCCAATAAGTTGTAGCTAGAAGAGACAGAGGGTCCGCCACTATATCCCTCCCAGAGGAGACTGGGAACCACCACTAACAGCTCAGTTTCTCTCACTTCTCTTAGCAGGCGTAGGCGCAGGTAGAGCTGTCAAAGGAACAAAAATAGAAACATAGAGCTTGGGAGACAAAGCTGTCCTCATTACAGCTGAGATAAAGCACTGCAGATAACACATCttcagaagtaaaaaaaaaaacatcccagaCAGAATGGAAGTGGTGCTGACCAGACTCCGAGATTTCTCCTGTAAGGAAGCTTCCTTCGAAGACCCCAAAGCAGCAGTGATGTTCAGAGAGCGTCCAGCAGCAGAGAACCTCTGCAGGCCAGAGAACGTGGGCTGTGACCAGACCGGACGACTGGACATCGAGAGTGCTCTGGCCTGGCTGAGACGAGAGCTGATGGAGATGCGCTCACAGGACCAGGCTCTAGTCCGGCAGCTGATGGACCTCCACGCTGGCATCCAGGAGCTGAAGCAggagtgttctctggaatatgAAGATGATGAAGAGCAGGAGGACGATGAAGAGCCATGCTGGGACTCAGGAAGCGAGACAGGGGGGAGCAGTGCCTCCTCTTATTCAGGAGAGATGTGTTTTTACCCCTCTATCTACTCCCCCTATCGCAACAGTCCACTTCCTGTAGGCTGTATACCAAAGAGGGCCTTCTGCCGACGCAGCTCAGTGCCTTAGAGAGCTGCTGCACGTCATctgaacaaacattttttaaacctgtGCTGCTCTCACATTCATTTACACCATTCACACTTCACTATACTGACGTATCAGATCACCTGACGTATCATCTTACCGACGTATCAGCTTACCGATGTATCAGCTTACTGACGCATCACTACCTGCATTCAGTGAGAAATCATAGTATGTGTATATGGCTAAGGTAGAGGTGTGTGAATTGACGATATGATATCATTATCATGATAAATCACATCACAATAAGCATTTCTGTGCATA

Function

NR:

description
PREDICTED: alanine and arginine-rich domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604911.2 True 1020 mRNA 0.49 2 30978750 30985844

Neighbor

gene id symbol gene type direction distance location
utp23 utp23 coding upstream 4239 30971403 ~ 30974511 (+)
LOC111195487 NA coding upstream 728895 30248587 ~ 30249855 (+)
LOC103022546 NA coding upstream 1325929 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 1342701 29626287 ~ 29636049 (+)
LOC103021940 LOC108426757 coding upstream 1353282 29607069 ~ 29625468 (+)
stmnd1 NA coding downstream 70176 31056020 ~ 31062482 (+)
cap2 cap2,LOC107706226 coding downstream 112055 31097899 ~ 31133970 (+)
vps28 vps28,LOC107592928,LOC107696523 coding downstream 155994 31141838 ~ 31149221 (+)
mapk15 mapk15,LOC107696521 coding downstream 165016 31150860 ~ 31162358 (+)
grina grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 coding downstream 178382 31164226 ~ 31187101 (+)
G201010 NA non-coding upstream 168524 30809995 ~ 30810226 (+)
G201008 NA non-coding upstream 230548 30748003 ~ 30748202 (+)
G201006 NA non-coding upstream 235300 30742759 ~ 30743450 (+)
G201004 NA non-coding upstream 237820 30740678 ~ 30740930 (+)
G200971 trps1 non-coding upstream 490246 30484658 ~ 30488504 (+)
G201030 NA non-coding downstream 19788 31005632 ~ 31005925 (+)
G201019 nup153,LOC107706220 non-coding downstream 32760 31018604 ~ 31029889 (+)
G201135 NA non-coding downstream 274101 31259945 ~ 31262960 (+)
G201163 NA non-coding downstream 455601 31441445 ~ 31451756 (+)
G201167 NA non-coding downstream 562505 31548349 ~ 31631753 (+)
lypla2 lypla2,lypa2 other upstream 1410675 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 1425866 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2782552 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 2990855 27978282 ~ 27987895 (+)
G200235 NA other upstream 3160100 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 24082 31009926 ~ 31084633 (+)
G201018 NA other downstream 26867 31012711 ~ 31015045 (+)
G201207 NA other downstream 956358 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 1067871 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 1283454 32269298 ~ 32287803 (+)

Expression


Co-expression Network