LOC107197622 (LOC107197622)


Basic Information

Item Value
gene id LOC107197622
gene name LOC107197622
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21351562 ~ 21356335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605816.2
tttAAGCACAAAGCattaagaattttttttgtgtttttttttttttattattcacaaaaacatttatatttaaagggGGGTGTGGGTGATTTTTGAGGCTGCTAAtgaagtttaaaaaaacaatgatcaTCTGCATTAAAGACAAAGGCATGGTTGCAGAAGTAGAGGGTACGGGCCTGCCTGCAGAATAttcttttaaatcatattttacagtCCTTAGCCATTGTCTCAGTTTATGGACCTTGTGGACTGATTGTATACTTAAACCTTTTGTAAGTATGCCCATCAAAAGCCATAAACACCATGCTTAAAGCCACTTAATCCTATCCATGTGACATCTGGCCCATCCAATGGTTGTAAGCTGACCTTAGTGGGAAGCGGGAAAGGAAAAGGCGGAGGGAGAAATTGGTAGCCATGTGATCAATGGGCCAgctttttaaatcattaatgCACATGATTTATTTATGGCCTTATTTGGATACTTGCACCCCTCAGGGGTGGCCACATTCAGTCTGTCTGACTGTGGTGTAATCAGACATGAGTGGAGTCCGGGCCCCATCAGGCATGACCCTGAGCGCTGTGGAGCCCAAGCACCAGCAAGCTGTTCAGAGGACCCGTGCCCTGACCCGAACATACCTGCTGTCCAGCTCCATGCTGCCAATACCACCCTCCAGTAACCAGAGCATCGGTGAATCTCTGAAGCTTCCAGCACTGACCAGAACAGCATATCGCCGGACCTCCCTGCTACCACTCAGCATTAGTGAGCCCTCCCTGTTCGCCCCAGTCCAGCGTGTGGTTTTGGACGGGTTTCCTCGAAATTGCCGCCCTTGTCCTCGTAAACGagctcaatctctctctctatgcaagtcaagtgaaaataaaaatggacCAATACCGAGCTACCAGCCAATATACACCCACTTTACTCAACCAATAAGACCAGTTTCCAAACTAAATCAGCAGCCCATTTTACGGGCTAGGAGGCTCCCTGCTGGCCAGAGTGGCCTACGATCTtcagtaaagcagtattggCAGGATCCTCACAATGAGACTTTATCCATCAGAGGGACACCTTGTCTTCCAAGCCCGCCTTCACCCTCTACCTCTGCCACCACGTCTCGCACTCAGCTACATGTTTTCCTCCCGGTTGAAGGTTCTGGAGGGGAAGAAGACAAAGACAGTGAATCTGTGGATGAAGGTTTCATGGATGAGGTGGATAATAAAGCCTCAATtctgaggcacaaaaaaggagaATCAAAGAAAGAGCCTATACAAACTGATTGTGCAACATCATTAAAAGCTGATTTGGTCCAGTTAGTGACCTGAGTGTTTATTCATGCCATGCTAATTGCTGTTTTACAGTGAAGTGAATTCATACACGAATATTATCTTAGCCTGATATATGTCTGATAAGAAGtgtgaattaaatttaaatatcacTTGTGACTGTATGGAATACTGAGTAGCATTAGACCAGAGCTGTCAATGTTCCTTCCAGGTAACAGCTGTGCAGAAATATAAGTATTTCCTCTTGTTAATTAAATGATGGGTTAAATCATGACCTTTGTTGTGGAAAGTTCCTCACAGCACTCGgtcatactgaacatcctgactGTATCAGAGGACCAGTTTAATTTTCAGAACTGGTCTGGTCTCTTATGGGTTAATAACCCAGTACTTCATGCTAGAACAAAACTAAATTTCTGTATATAACTGACTGTAGTCGCTGAACACTTGTACCAGAGTAagtaatcaataaataatacaaacaatC

Function

NR:

description
uncharacterized protein LOC107197622

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605816.2 True 1774 mRNA 0.43 2 21351562 21356335

Neighbor

gene id symbol gene type direction distance location
LOC103038471 sfpq,LOC107669930,LOC107722137,LOC107566770 coding upstream 465 21330005 ~ 21351097 (+)
lpcat1 lpcat1,LOC107754844,LOC107694330 coding upstream 1037581 20276631 ~ 20313981 (+)
LOC103030452 irx4 coding upstream 1096782 20249200 ~ 20254780 (+)
LOC103022559 LOC108433845 coding upstream 1196092 20143895 ~ 20155470 (+)
srfbp1 NA coding upstream 1208657 20137795 ~ 20142905 (+)
otud6b otud6b,LOC107556329 coding downstream 33803 21390138 ~ 21395528 (+)
lrrc69 NA coding downstream 45154 21401489 ~ 21406189 (+)
fam92a fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073 coding downstream 504243 21860578 ~ 21872452 (+)
LOC103033932 LOC108424940 coding downstream 575461 21931796 ~ 21944254 (+)
LOC103030765 klhl38a,LOC103030765,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC108272409,LOC105907674 coding downstream 678850 22035185 ~ 22042547 (+)
G198848 NA non-coding upstream 260531 21090756 ~ 21091031 (+)
G198842 NA non-coding upstream 291350 21060000 ~ 21060212 (+)
G198839 NA non-coding upstream 304673 21046592 ~ 21046889 (+)
G198830 NA non-coding upstream 420038 20931218 ~ 20931524 (+)
G198820 NA non-coding upstream 535991 20815141 ~ 20815571 (+)
G198881 NA non-coding downstream 42397 21398732 ~ 21399000 (+)
G198939 NA non-coding downstream 204667 21561002 ~ 21561215 (+)
G198943 NA non-coding downstream 263303 21619638 ~ 21619845 (+)
G198947 NA non-coding downstream 300081 21656416 ~ 21656764 (+)
G198965 NA non-coding downstream 449139 21805474 ~ 21805739 (+)
G198815 NA other upstream 548672 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 1076708 20273021 ~ 20274854 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other upstream 1262575 20053028 ~ 20088987 (+)
G198540 NA other upstream 2104166 19246972 ~ 19247396 (+)
G198535 NA other upstream 2145904 19205077 ~ 19205658 (+)
LOC103037930 NA other downstream 2129 21358464 ~ 21383000 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other downstream 862930 22219265 ~ 22223036 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other downstream 1473896 22830231 ~ 22869257 (+)
ndufs5 ndufs5 other downstream 4261593 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 5229904 26586239 ~ 26613188 (+)

Expression


Co-expression Network