LOC103030274


Basic Information

Item Value
gene id LOC103030274
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12997589 ~ 12999507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607232.2
ATGGGGTGGATGTTCCGTTGCCTTGTCACCTGCTGGATGTGGTGTTCTCTTCTCTCCATGCTGAATGCAGAAGAAGAGCCAGAACTAGGTGGGCCAAGAGAATGCAAGAATGCTCACTTCGTACCTGGATACAACCTTGGAGGAGAGGGCTTTGACGTTGTGAAGATGGAGCAAAAAGCGTCTTACGTGATCGACATGGAGAAGTGGGACAGAGGGAACCGCAGTTGCCTAATTTATCGGAACGCATATTTGAAGAATGTAAGGCAGAAGATACCGGCAGCTGTGACCTACTGGAGAAAACTTCCGAAGTGTTCAATGAAGGTTGTAAGCCAGATTTATGACTCCAGTGAAGCTCTTGTGAAAAGTTCTACCTCATCGATTTCAAACAACTGGAAATATGGACTGAGTTTGCCACACAGCAGTTTGGGTTCTATAGGAGGCACTCATTCCCGTGAAGCAACATACGCAATGAAAAAGTCCAAAGAAGACAAGTACAGTTTCACCAAGCATGATGTCACATGTAGCTTCTACAGCTACAAAATAACATCTTCACCACCACTGCATCGGGAATTTCTTCGCGCTGTTAGGTCTCTTCCTCGAAAATATAATTCAGCATCTTATCAAGCCATAATTGACAAGTTTggcacacactataccacaggAGTGGATTTAGGTGGGAGGATGAAAGCGGTAACAGCCATTAGAACCTGCAAAGCAGAAATGAGTGGCCTTACCGAAACAGCAGTTAAAGACTGTTTGGATGTGGAGGCATCAGGTACGTACAAGGGTGTCACCCTGAAAGCAGAGGCCCAACACTGTCAGGACCTGAAAAGAAGAATGAGTACAAATAGGAAATTCAGCTCCATGTTTAATGAACGACAGACAGAGATTATTGGAGGCAACATCAATGGTGAGGATATCCTTTTCTCTCCTAATTCACATCCATATGCACGAAAAGCGTGGGTGGAATCTCTGAAGACCATCCCAAATGTGGTGAGATACTCTCTTCAACCCCTGCACTCCGTGCTGAGTTACAATCACCCTGCTAGGAATGGACTAAAGAAAGCTATTGAGAAGTATATCATTGCAAATGCTTTACGAAAGGCTTGCTCTGGGTCTTGTTATATAGGGCATCGCACTAGTGTAAGGGATCGCTGTGCTTGTGTCTGTAGAAGAAGCCAAGTAATTACTGCCAACTgctgtcctgctgaaaaaaatcttGCCACGCTGAGGGTTTACAACCTCCATGCCAATGGGTTATATGGAGACGTATGGACTGCAACAGATGGCTCGGTTGAAGTTTCTTACGGGTCCACAATCGCACGTACTCAAgtgattaataataacaacaatccCTGGTGGAGAGAATCGTTTCAGTTTGGTCCTGTCAAGCTGTCCAAAGGCCGAAAACTCACTTTCAAAATATACGATGCAGACTATTACTGGAACAGTGACTTTCTTGGACAGTGCTCCATTGACCTGAAAAGTGGAGTTGTGACTAACGCATGTTACTTAAAGCATGGAACTTTCTTTTACACCTATTCATTAAAATGTGCTCCCAGTCTGCAGGGTAAACGGTGTGAAAATTATAGTCGTTCTCCAATGGACACCGAGCTGGCCAAAATATTCCGCTCTCGAAACGGCATTCTGGCTAAAGATATGTGGAAACTCCAGGCAGCTCAGAACAACTCCAATAAGCTCTACTATAAGAGTGATTATCTGTAACAGCAGAACCAGATCATGTTCCAGCAGTTATGTTGCTTAAACAGCTTAGCTCTTATTGCTTGTTtgacaaatgaaaaaataataatacaataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607232.2 True 1819 mRNA 0.44 2 12997589 12999507

Neighbor

gene id symbol gene type direction distance location
LOC103028905 NA coding upstream 92963 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 101137 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 208811 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 289421 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 382407 12535431 ~ 12615182 (+)
LOC111195514 NA coding downstream 29401 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 41684 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 70976 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 86239 13085746 ~ 13087926 (+)
thap7 NA coding downstream 90010 13089517 ~ 13094495 (+)
G197206 NA non-coding upstream 714 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 55305 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 56507 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 58948 12938357 ~ 12938641 (+)
G197190 NA non-coding upstream 66646 12930606 ~ 12930943 (+)
G197213 NA non-coding downstream 32576 13032083 ~ 13033290 (+)
G197227 NA non-coding downstream 97045 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 113984 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 141662 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 144476 13143983 ~ 13144700 (+)
s100a14 s100a14,LOC108442988 other upstream 33240 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 69062 12889358 ~ 12928527 (+)
G197106 NA other upstream 223093 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1251354 11687399 ~ 11746235 (+)
polr2k NA other upstream 1443006 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 324879 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1277284 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1466758 14466265 ~ 14468882 (+)
G197665 NA other downstream 1794913 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2762416 15761923 ~ 15789854 (+)

Expression


Co-expression Network