trappc3 (trappc3)


Basic Information

Item Value
gene id trappc3
gene name trappc3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25370501 ~ 25377202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608266.2
GCGAGAAAAAACACCCGACATACAGGAAGTGATAGAGGAAGTAGCTTTGGAATCGATACAGGAGCAGGAGCAGTATCTGTTTTACAGAgcagattaataaaatataggCTGTAATCTGCCCGCGCAGCGCTGCAACACCGAACACCATGTCCAGGCAGTCTAACAGATCCACTGACACTAAGAAGATGAATTCTGAACTGTTTACTCTTACATATGGAGCCCTGGTCACTCAGCTATGTAAAGATTATGAAAATGATGAAGAAGTGAACAAGCAGCTTGAGAAAATGGGTTACAATATTGGAGTACGACTCATTGAGGACTTCTTGGCTCGCTCCAGCGTAGGCAGGTGTCAGGATTTCCGAGAAACAGCTGATGTCATTGCAAAGGTTGCCTTCAAGATGTACCTGGGCATCACCCCCAGTGTGACTAACTGGAGCCCTGCTGGAGATGAGTTCTCTCTCATCCTGGAGAGCAACCCACTGGTGGACTTTGTGGAGCTTCCAGACAACCACAGCACTCTAATCTACTCTAACTTGCTGTGTGGAGTGCTGAGAGGAGCTTTGGAGATGGTTCAAATGGCTGTGGATGTGCGATTTGCTCAAGACACGCTAAGAGGGGACAATGTGACAGAGATCCGCATGAAATTCATCAAGAGGATTGAGGAAAACTTGCCTGCAGGAGACGAATGAGGCTGttgtgatgtgtgatgtgtgatgtaTTCGTTCTGgaaagctccagctccagctccttgGACCTGATAGACTTCTATCGTGAAGTTTCGGTGGGAACCACAGACCTACAGTTagtcaaagaaaaaacaaaccaagaaaagaaaaacatcgGACTCCCTTTCTGTCTCCTCAGGCATCGCAGTACAGTACATCCTCAGCCATCTttctactttcttttttttttttttttttgggttagaCAATTGAAACCACCTGAGACTTTTCTGCTCTCAGTGAATTCTCACTTCTCCTAACTTGGAGTTTTATATAGAGCCCTTTTCAGATATTCAGAGGTCATCTCACTTGATCTCATTAGGAAGACTCATGAAGTAGATGATTCTTGTGATTGCTGTTGTTATAAATATCCCAAAAAATCCGTATGGAATTTGTAATCAATGAATAAGAAATGTATACCTAATGTTTAGTCACATTTTGAATGATCTTTGAGGAAAATAATAGTACCGCAGCACTAAGTGGTATTGTTCTCTTTAgttcatcatcattattttgCTGAATGAAAGAAACAGGGGACGTGTGTTCAGGCTCATTTTAATTTGGATTGTAATTGAGCACAGATGTACCATGTATCCCCTTTTACTAGGGATATCTTTATCTCCTCTCTTGGCCCCATATTGAAGAAGTTTTCAGTCTTGTGGAATTTGCATCTCATAGTTTGGCATAACTTGTAAAAAGCCatgtgtttcctttttttgattctgtctcttttttctgtcaTGTAAAGGATATGTGGCACATGTGAGTGTATTTATTTACCAATGGGAAAATGTatcaaatgtaataaattactAACTGAATGAG

Function

symbol description
trappc3 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network membrane and cytosol. Orthologous to several human genes including TRAPPC3 (trafficking protein particle complex subunit 3).

NR:

description
PREDICTED: trafficking protein particle complex subunit 3

GO: NA

KEGG:

id description
K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608266.2 True 1550 mRNA 0.41 5 25370501 25377202

Neighbor

gene id symbol gene type direction distance location
csmd2 csmd2,LOC107698986 coding upstream 294710 24648033 ~ 25075791 (+)
LOC103034043 NA coding upstream 1119112 24241364 ~ 24251389 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 1421508 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 1438461 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 1614944 23688512 ~ 23755557 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 39366 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 152202 25529404 ~ 25560124 (+)
anln NA coding downstream 190470 25567672 ~ 25579392 (+)
ak2 ak2,LOC107556372,LOC107710539,LOC107653866,LOC107670285 coding downstream 203786 25580988 ~ 25587640 (+)
rnf19b rnf19b,LOC107710473,LOC107724316 coding downstream 212346 25589548 ~ 25614781 (+)
G199669 NA non-coding upstream 61554 25308642 ~ 25308947 (+)
LOC103041709 NA non-coding upstream 69645 25297042 ~ 25300856 (+)
G199625 NA non-coding upstream 70809 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding upstream 258226 25111809 ~ 25112275 (+)
G199588 NA non-coding upstream 932462 24437805 ~ 24438039 (+)
G199683 NA non-coding downstream 195 25377397 ~ 25378146 (+)
G199684 NA non-coding downstream 1377 25378579 ~ 25378825 (+)
G199691 NA non-coding downstream 139695 25516897 ~ 25548341 (+)
G199739 wisp1,LOC108425715,LOC107670277,LOC107710734,LOC107574716,LOC107724346,LOC105022817 non-coding downstream 547017 25924219 ~ 25925353 (+)
G199741 NA non-coding downstream 552722 25929924 ~ 25930410 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 2501244 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 3147465 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 3987501 21358464 ~ 21383000 (+)
G198815 NA other upstream 4567611 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 5095647 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 240726 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 1209037 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 1454752 26831954 ~ 26892623 (+)
G200104 NA other downstream 1907018 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 1927319 27304521 ~ 27305586 (+)

Expression


Co-expression Network