LOC111195487


Basic Information

Item Value
gene id LOC111195487
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 30248587 ~ 30249855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682872.1
ATGCGGGCACCAGTACCACTCTTTAAATCTATCTTGAGCCAGCGGCAACCTAGGGAAGCAGCCAGACGGCCCGAACAACCACCCAACCCACACCCCAGGCAGGGTGCACGAAACCAGGGTGTGAGAAGACCTGACCCCTCCTCTCCCCCCACACCCAGCATGTTGCAACTGAGTAGGAGTCGGGGAAGGGCAGGAAAGGACCGAGGGGCAGAGGACTACCCCCGGAGGAAGAGAAGCCAACTACTGTGGACTGCACTAGCACCGTTCCATACCCCCAACCGCAAGTACAGGGAAGtggtcCTGAGCCCAGGACCACCGGTCTTAAGTGGGAGACTGCCGCTTCCCCACCTGAGCGCCCCTACCTCCCCACAGGGAGGGCACCCAGAATCCCGGAATGCCAACCAGACAATCCAAACGGGACAAACCACCACCCCCCACGACGGCGCGCCCAAGAGAGGCATAGACCCTCCCCAGCGCAGGGAGGGACCCAAACAGGCGACAGACGCCCACGGGCACCAGGGCCCCGGACTCCGCACCCCGACCGCCACAGGGGAACCCAGCCAACCGGACAGGGCCAGCACCCACCACCATGGGCCCCCCAGACCCACACCCCAAGACCACAAGAGCATACATCCAGGCCCCCCCCACCAACAACCAGGGCCCGCACACATAAATCACCAAGCGGCAGCCACCGTCCCCAGTCCAAGAGCCATCAGACACCGAATCCCCCGATCCCCCCCCAGCCACCTTCCGGCAACGCATAACCAGGAGACACGACTACAGCCGCCCACCCCCATCATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682872.1 True 804 mRNA 0.64 3 30248587 30249855

Neighbor

gene id symbol gene type direction distance location
LOC103022546 NA coding upstream 595766 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 612538 29626287 ~ 29636049 (+)
LOC103021940 LOC108426757 coding upstream 623119 29607069 ~ 29625468 (+)
gatad1 gatad1,LOC102800149 coding upstream 643834 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 648423 29570078 ~ 29600164 (+)
utp23 utp23 coding downstream 721548 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 728895 30978750 ~ 30985844 (+)
stmnd1 NA coding downstream 806165 31056020 ~ 31062482 (+)
cap2 cap2,LOC107706226 coding downstream 848044 31097899 ~ 31133970 (+)
vps28 vps28,LOC107592928,LOC107696523 coding downstream 891983 31141838 ~ 31149221 (+)
G200840 NA non-coding upstream 370186 29873510 ~ 29878401 (+)
LOC111195537 NA non-coding upstream 504354 29674786 ~ 29744233 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding upstream 608580 29636121 ~ 29640007 (+)
G200799 NA non-coding upstream 655050 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 762901 29484940 ~ 29485686 (+)
G200864 NA non-coding downstream 99510 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 150391 30400246 ~ 30400752 (+)
G200971 trps1 non-coding downstream 234803 30484658 ~ 30488504 (+)
G201004 NA non-coding downstream 490823 30740678 ~ 30740930 (+)
G201006 NA non-coding downstream 492904 30742759 ~ 30743450 (+)
lypla2 lypla2,lypa2 other upstream 680512 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 695703 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2052389 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 2260692 27978282 ~ 27987895 (+)
G200235 NA other upstream 2429937 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 760071 31009926 ~ 31084633 (+)
G201018 NA other downstream 762856 31012711 ~ 31015045 (+)
G201207 NA other downstream 1692347 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 1803860 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2019443 32269298 ~ 32287803 (+)

Expression


Co-expression Network