ints1 (ints1,LOC107703394,LOC107572041)


Basic Information

Item Value
gene id ints1
gene name ints1,LOC107703394,LOC107572041
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33939434 ~ 33998741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682875.1
AGCAGGGGGAGGTAGCTGGTAGCCGGTAGCCGGTAGCTGCTCGCTGCTCTCAGGCTCTGGATTAAAGACAGCGCTGTTGTTATGATGGAGGAGCGGCtctgagacagatTCTTAGAAGTTGAGCATCATACTGAAGTCATGAATCGACCAAAGCCAACCGGCATCAGGCGCCCGAGCGGGGCCAAAACATCAGGTCATCCTCCTCCAGGAGACTTCATAGCTCTGGGGGCTAAGAGCCAGGCCAGTGAGGCCAAGGCGAATCCAGCACTGCTGAAACCAGCTGCTGCGGGTTTACCGGCAGACCGCAAGAGAGAGGCTTCCTCAGCTCTGCCGTCCTCCTCAGGCCTGTCCAGCCTGGCTAAACGGCCGAAACACTCCTCCACCCCTCCCAGCGCTCTCTCACGACTGGCTGAAGTAGCTGCTGTTGACAAACGGGCAATATCTCCCTCCATCAAGGAGCCGTCTGTTGTGCCTATTGAGGTTCCTCCTGCTGTACTCCTGGATGAGATCGAAGCAGCAGAGTCTGAAGGCAACGATGATCGCATTGAGGGAGTTCTCTGTGGGGCCGTCAAGCAGCTGAAGATGAACCGGGCCAAGCCTGACGTCACCCTGTACCTCAGCCTGATGTTCCTGGCTAAGATTAAGCCCAACTTGTTTGCTACAGAAGGAGTGATTGagGCCCTGTGCAGCCTTCTTCGCCGGGATGCCTCCATTAACTTTAAAGCAAAGGGTAACAGCCTGGTGTCCGTTCTGGCCTGTAACCTTCTCATGGCAGCTTATGAAGAGGATGAGAACTGGCCTGAGATCTTTGTAAAAGTATATATCGAAGATTCTCTTGGGGAGCGAATCTGGGTGGatagttcacactgtaaaacctTCGTAGACAACATTCAGACAGCTTTCACCACCAAGATGCCCCCGAAGAGTATGCTGCTtcagactgagactggacgccCTGGAGGGGATCTCAGTGCTGGTAACAGCCCTCATCCTTCCACTCCTGATGAAGATGATAATCAGACTGAACTTCTGATCGCTGAGGAGAAACTCAGTCCAGAGGAAGAAGAGCAGGTCATGCCCAGgtatgATGAGCTGGCGGAGAGCGTGGAGGACTATGTGCTGGACATGTTGAAGGACCAGCTGAACCGCAGACAGCCAATGGACAACGTGTCCAGGAACCTGCTGCGTCTGCTCACGGCCACCTGCGGCTACAAGGAGGTGCGGCTGATGGCCGTGCAGAGGCTGGAGATGTGGCTGCAGAATCCTAAGTTGACGAGACCAGCGCAGGACCTCctcatgtctctgtgtatgAACTGCAGAACTCACGGATCCGACGACATGGAGGTGATCTCCAACCTCATCAAGATCCGTCTGAAGCCCAAAGTGCTGCTGAACCACTACATGCTGTGTGTCAGGGAGCTCCTGAATGCGCACAGAGACAACCTGGGCACCATGGTTAAATTTGTGATATTTAACGAACTGTCCAATGCCAGAAATCCTAACAACATGCAGGTGCTTCATacagtcctgcagcacagcccAGAGCAAGCGCCCAAGTTCCTGGCCATGGTGTTCCAGGACCTGCTGACCAATAAGGATGATTATCTGCGAGCATCACGTGCCCTGCTGAGGGAGATCATCAAGCAGACCAAGCACGAGATCAACTTCCAGTCCTTCTGCCTGGGACTCATGCAGGAGAGGAAGGAGGCCACCTATGTGGACATGGAGTTTAAAGAGCGATTTGTTATCCAGGTAACAGATCTGCTGACCGTGTCCATGATGCTGGGCATCACAGCACAGGTCAAAGAAGCTGGCATTGCCTGGGACAAAGGAGAGAAGAAGAATCTGGAGGTTCTCAGATCCTTTCAGAACCAGATCGCTGCCATCCAGAGAGACGCTGTGTGGTGGCTGCACACTGTGGTTCCTACCATCAGCAAACTGGGGCCTAAAGACTATGTGCACTGCCTCCACAAAGTGCTGTTCACAGAGCAGCCTGAGACATACTACAAGTGGGATAACTGGCCTCCTGAAAGCGACAGGAATTTCTTCCTGCGTCTGTGCTCGGAGGTTCCTCTGCTGGAGGACACactgatgcgcattttggtgatCGGCCTGTCGAGAGACCTGCCTCTTGGCCCGGCTGATGCCATGGAGCTGGCTGATCACTTGGTAAAAAGAGCTGCAGGGGTCCAGTCTGATGATCTGAACGTGTTGCGTGTGGAGAGGATTCAGCTGATTGatgctgtgctgaacttgtgtACATACCATCATCCAGAGAACATCCAGCTTCCTGCAGGATACCAGCCTCCAAATCTGGCCATATCTACTCTTTACTGGAAGGCCTGGCTGCTGTTGCTTGTGGTAGCCGCCTTCAACCCGCAGAAAATCGGTCTTGCTGCCTGGGATGGATATCCCACTCTCAAAATGCTGATGGAGATGGTCATGACCAACAACTACTCCTACCCTCCGTGCACGGTGGCTGATGAGGAAACTAAGACGGAGATGATCAGCCGTGAGCTGCAGGTCTCTCAGAAGGAGCGTCAGGAGATCCTGGCCTTCGAGAGCCACCTGGCAGCGGCCTCCACCAAGCAGACCATCACAGAGAGCAATAGCCTCCTGCTCTCTCAGCTCACGAGCCTGGAGCCAAAAGGGCCTCCACGCAGACCCCCGCCCCACGTTCAGGAGCAGGTGAAGAGTCTGAACCAGTCCCTGCGCCTGGGCCACCTGCTGTGCCGCAGCCGCAACCCGGACTTCCTGCTCAACATCATCCAGAGACAGGCATCCTCCCAGTCCATGCCATGGCTGGCTGACCTGGTACAGTCCAGTGAGGGGTCTTTGGATGTGTTGCCAGTTCAGTGCCTGTGTGAATTCCTCCTCCATGATGCAGCTGATGAAACTCCCTCTgctgatgatgaagaagaaggagagagcAAAGAGCAGAGGGCAAAGAAAAGACAGaggcagCAGAAGCAGAGGCAGCTCCTGGGCCGGCTTCAGGACCTGCTGGTGGGGCCTAAGGCAGATGAGCAGACCACCCATGAAGTGCTGGACTACTTCTTGCGTCGACTTAGCTCCTCTCAGGTGGCATCCAGAGTTCTCGCTATGAAGGGTCTGTCTCTGGTGCTGACTGAAGGTGGGCTGAAGGACGGAGAGGAGCGGGATCAGCCCATGGAGGAGGATTCCAGGGATGCTGAGTTGCTGCCAGCTTACCAGTGGCTTCTGCAGGACATGCCCAAACTGCCACTGTTCGACAGTGTGAGGAGCATGACGGCCAGCGCCCTGCAGCAGgccgTTCACATGGAGACAGATCCTCAGACCATCAGCGCTTATCTCATCTACctctcccagcatgcaccagtGGAGGAGCAGAGCTTGCATAACGATTTGGCACTTGACGTGGCCAGGCTGATCGTGGAGCGCTCCACCATCATGAACAGTCTGTTCTCTAAGCACTCCTTCAGGCCGGAGTCCGACGCCGTGCTCGCCGCCCTCATCTCCATTTTCTCCACCTACATTCGCCGCATGAGGAAGACGAAGGAGGGCGAGGACCTGTACAGCTGGTCGGAGTCTCAGGACCAGGTGTTTCTGCGCTGGACCTCGGGTGAAACTGCTACTATGCACATTTTGGTGGTTCATGCTATGGTCATTCTGCTCACACTGGGACCACCCAAAGGTGAAAGTGACTTCTTCACCCTGCTGGATATCTGGTTCCCAGATAAGAAGCCCCTTCCCACTGCTTTCTTGGTGGACACATCTGAAGAGGCGCTTCTGTTGCCTGATTGGCTGAAGCTGCGGATGATTCGCTCTGAGGTCTCCCGATTGGTTGATGCAGCACTGCAGGATCTGGAGCCgcagcagctgctgctgtttgtgcAGTCGTTCGGCATCCCTGTGTCCAGCATGAGCAAACTGCTGCAGTACCTGGACCAGGCCGTCTCCCACGACCCGCAGACGCTGGAGCAGAACATCATGGACAAGAACTACATGGCTCATCTTGTGGAGGTGCAGCATGAGAGAGGAGCCACCGGAGGGCACACTTTCCACAGCTTACTCAGCGCCTCACTTCCTCCCCGCAGAGACAGTGCAGAGGTGAGCAGGGCTAAAGTCACAGTGGAGACGCCCCACGGCTCAGTGAAGACGAGGACCTTGGGTCAGGTGCCCGTCATTGGACCTGAAGATGACCTCGCTGGTGTCCTGCTACAGCTGTTCCCTCTGAAGGTGGACCCGCGCTGGCCCACACCCCCTGCCCGTCCTCTGGCTCTGGCCCTGCAACAGACTCTGGCTCAGGAGGTCCTGCGTGCTCGGCAGGGACACGGCCAGCAGGGCGGCGTTGCTGCGCGCCTCCTCCAGGCCCTGGCTGCCCTGCTGAGCTCCTCCCATGCTGGACCTCTGCTCTTGGCAATGCACCAGAGCCACGCCATCTCCTGTCCTCTGCTGCGCCAGCTGCACCTGTACCAGCGGCTGATGTCTCAGGACGTGGCGTTCGCCTCGCTCTTCTTTAAGGTGCTGATGCAGATGTTGACCTGGTTGGAGAGCTCGACGGTGGAGCCGGGACCCCTCAACACCCTGCTGAAGTCTCTGGCTGCCCAGTACTCTCACAAGCACCGCATCACTGACGTGCGTTCAGGCTTCCTGCACCTGGCTGAGGCTCTGGCGTACAGACGGGACTCAGAAGTGCCAGTGAGGGGAGTCATTGCCTCGCTGAAGGCTGGAGAGAGATGCAACGCTGAGCCTGAGCTCATCATTAAAGGTAGATTACCCATAATGTGTTGTCTGTGGCAACTTGTATATGTTGGTATaatgtttttgtctgtgtgtgtatgcaacAGGAGTTCCGAGGGTAAAAGAAGCGGTTCTAGTTCAGGGCTGTTGGTGGACTGGCTTGAGCTGCTCGACCCTGAGGTGACCTCTGTCTGCTCAGACCTCCAGCAAAAGCTGCTCTTCTCTTTAAATAAGcAGAGTAAAGctggaggagtgtgtgtagCCCCCTCATACAGACCCTACCTGCTGGCCCTGCTCACTCACCAGTCTAACTGGAGCACTTTACACCAGTGCATCAGCTCACTGCTCAACAGACCCAGAGAGCACAGGGTGGACCCCTCCTCAGCTCTGGACTTCCTGTGGGCCTGCAGTCACATTCCTCGTATCTGGCAGGGCAGAGACCAGAAAACTCCACAGAAGCGCACAGAGAAGTTTGTGTTGAAGCTCTCCGCTGATGAGCTGATCAGTCTGGTGGATCTGATTCTGTGCGAGTCAGAGCTGAGCTGGAGGGACACGGGTCAGGCTAAAGACACTCTGGACCAGGCCTCGTGCTCCCTAATCCAGTCTCGCTTACCCCTGCTCCAGAGCTGCTGCCATGGGGACCTGCAGAGCGTCCGCAAGGTCTCCGAGTACCTCATCAACTGCGTCAAGAAGTGGGGAGACAGTGTGATGAGCAAGAGGTGTGAGAACCTGCTGCTGCAGATCTACCTGCAGTTCCCTGAGGTCATCCAGCATGTCCCCATGCCTGACGCTACCCTGAGCGGCGAGGCTGCTGGTGATGGAAGCACCTGCAAGCTGGATGTTCTGGTGCATCGTCTCATCACTCTTCTAGCTGATACAGGAGAGTCCAAATCAACAGAGAACCGAGCTTCCGACGCCAACCTGGCCTGCAGGAAGTTAGCAGTGTCACACCCTGTACTTCTGCTTCGGCACCTCCCCATGATCGCTGCTCTACTGCACGGCCGGACCCACCTCAACCTTCAGGAGTTAAAGAGGCAGCAGCACCACCTGACCTTCTTCAGCGACGTTCTGGCCATCCTGGAGCTGCTGCAGCCAATGGTCTTCCAGTCAgaccaccagagggcgctgCAGGACTGTCTTCTGTCCTTCATTAAAGTCTTGCAGAACTTCAGGAGATTGTCCCGTATCCCAATCATCAGCAAATTTGTGCAGTTCATTCAGAAATACATTACCCATGATGCAGCTGCTGCTGTACCTTATCTTCAGAAGCATTCAGATATTCTACAgGGTCTCTCCTCAGAGAACCCAGACCTGGTGCAGCTGAAGTCTCTGCTGGCTGGTCTGACTCTGCCTGTGAAGACGGGATCCTCAGAGATCTCCACAGAGGACAAAGACACGgCTGAAGAATCGTCTGCTGGCTCTCTGCCACTGGTCAGTATTTCAGCCTCCACGCCGCTCACTTCAGCAGACATGACCAAATACCTGAAGAAGATCTCCAGAGGGGAAGCCATTGAAGATGTGCTGGAGGTCTTAACTGAAGTGGATGAGAAGTCCAAGAGGAATCCTGAAATAATCCAGTATTTTGTTAATGACCTGCAGAGGCTGATGAGCTCACCTGAGGAGCTGTGTCGCAATATGGTCTTCAGTCTGGCGCTGCGCTGCATTCAGAACACGCCCAGTCTGGCATCAGACTTCCTGCCTACCTTCATGTATTGTCTGGGCAGTGGGAACTTTGACGTTGTCCAAACAGCCCTGAGGAACCTTCCGGAATACGTGCTGCTCTGCCAAGAGCACGCTGACATTCTGCTCCATAAGGCCTTCTTAGTGGGGATCTACGGCCAGATTGACACCAGCTCCATGATCTCAGAGTCAATGAAGGTCCTGCACATGGAGGCCACCACTTAGAACTCCTGTTCCTGTTCTATTCAGTcttaatatactagtgcatctcaaaaaaagttcaaataatatcattaaaaagttactttatttcagtaattcagttcagaatgtgaaactcatat

Function

symbol description
ints1 Predicted to be involved in U2 snRNA 3'-end processing. Predicted to be part of integrator complex. Is expressed in brain and eye. Used to study cataract and neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies. Orthologous to human INTS1 (integrator complex subunit 1).

NR:

description
PREDICTED: integrator complex subunit 1-like

GO: NA

KEGG:

id description
K13138 INTS1; integrator complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682875.1 True 6746 mRNA 0.55 47 33939434 33998741

Neighbor

gene id symbol gene type direction distance location
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding upstream 54789 33817531 ~ 33884645 (+)
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 590766 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 720598 33099446 ~ 33218836 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding upstream 906712 33006117 ~ 33032722 (+)
cpsf4 cpsf4 coding upstream 954067 32978956 ~ 32985367 (+)
LOC103027444 NA coding downstream 16961 34015702 ~ 34024202 (+)
micall2 micall2,micall2a coding downstream 35759 34034500 ~ 34076513 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 208111 34206852 ~ 34244019 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding downstream 247411 34246152 ~ 34256116 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding downstream 257823 34256564 ~ 34271331 (+)
G201722 NA non-coding upstream 31956 33816101 ~ 33907478 (+)
G201725 NA non-coding upstream 66897 33871849 ~ 33872537 (+)
G201708 NA non-coding upstream 234554 33704346 ~ 33704880 (+)
G201704 NA non-coding upstream 269143 33670082 ~ 33670291 (+)
G201699 NA non-coding upstream 280843 33658345 ~ 33658591 (+)
G201786 NA non-coding downstream 25581 34024322 ~ 34025453 (+)
G201800 NA non-coding downstream 79800 34078541 ~ 34078751 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding downstream 162704 34161445 ~ 34194241 (+)
G201830 NA non-coding downstream 309234 34307975 ~ 34309433 (+)
G201851 NA non-coding downstream 402856 34401597 ~ 34401908 (+)
psmg3 psmg3 other upstream 124448 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 664527 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 961524 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 1011515 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1651631 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 1107297 35106038 ~ 35124618 (+)
G202336 NA other downstream 2590707 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 2984582 36983323 ~ 36993332 (+)

Expression


Co-expression Network