micall2 (micall2,micall2a)


Basic Information

Item Value
gene id micall2
gene name micall2,micall2a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34034500 ~ 34076513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682876.1
CAGGTGTGTGAAGAGTGAAGCATCAGGTTCAgtcctctttctcctctttaGAGTTTCAGTCTCTCAGCTCTTCAGAAGCTGTTCTCTGCTGCActgctgtttctgtttctgctgctgGAGGTAAACAGAGCGCCTGGTGGTGGTGCTTTCCCAGTTTTGACTATCTGGaggaaggaggagaaggagggacAACACAGCCTCCTCCCACTGCTCCCAGTCCGGGATACAGAGCCACAGAGAACCGCAGACACCCACAGGAGCACCCAGAGATCCACAGGAGCTCACAGAGATCCACAGAGACCCACATAAACCTACAGAGAACCACAGAGatctgcagagatccacaggaGCCCTAAGGGGGGACCATGGCTGCTATCAAAGCCCTGCAGCAGTGGTGTAAGCTCCAGTGTGATGGGTATAGGGATGTGTCCATCATTAATATGACCACATCCTTCAGAGATGGACTGGCTTTCTGCGCTCTGATCCACAAGTTCAGACCGGACCTCATAAAATTCGAGACCCTCAGTAAAGACAATGTGTATGACAACAACCACTTGgcaTTTCGTGTGGCAGAGGATCATCTGGGGATTCCAGCTCTTCTGGATGCGGAGGACATGGTGGCGCTGCCGGTTCCAGACCGGCTCAGCATTCTCACCTACGTCTCCCAGTACTACAACTACTTCAGTGGGCGCTCACCCACAGGAGGAGTGGGAGGTGTTAAAAGGCCAGCAGAGGGCTCGAAGGAGGAGCCATCAGAGAAGAAGAATCTCCCAGTGGTTGCCAAAACCTTTAACCCACAAGCACTTCCCGAGAACCGGCCACCATCTTCCTCTGCCTCCTCTAAAGCTCCCAGAGAACTCCATCGTCCAGCTATCCTCATtcagaacagcagcagctctgagaAACACACCTCCACCCCCCTGACCCAGAAACCTGCTGTAGAGAACagaccagcatccacccacatCCAGAAACACTCTGCACCCAGTGTCTCACCCTCCAGAATCAGAGTGTCTCCTAAACCAGACCGAGCCTCTGAGAAGAACACCGTACTGGTGGAGAGCTCTAATAAAACTGGGACTCTGAACAGTAAGTGTGCTGTGTGCAGGAGTCACGTTCACCTGGTCCAGAGACACCTAGTGGATGGGAAACTCTACCACAGGAGCTGCTTCAAGTGTTCTGAGTGTTCGGCTCCTCTGAAGTCGGGCTCTTTTAAAGCGGGTCAGGAGCCGGGAACCCTGCTCTGCTCCTCCCATCACTCCACCCGCAATGGCTTCATGTCTTCACTGAAGAATCCGGGCTCTGAATCTGCTGTGTTCGGACCCAAACCTGAGACAGGAAGTGATCCAGCTCCTGCTCAGCACGTCTCTGTTCTCTCCAGCCCAGTTAAGGCCGTGCCCAGGCCGGTGGAGCCCCGCCCGGCCCCGCAGCCATGGACGGCGTCTGCGCAGAGAACGCAGGAGGCCAGACAGAGGTTCTTCCTGTCTGTAGACCCATCTCCACTTCCTTCAGTCAGTGCCAAGAGTCCATCTGATCCACCTGTAGCCCAGAACAACGTTCTGACATCTGAAGAGGAGAAGAACCGGGCCCGGGCCCTCATCACTAAGAAGCTAGCTGAAGGAAACTGCAACAATAACAACAGGGCTTACAGCTGTGGCCTCAGAACCACAGCCAGCAGCAGCTCGGCAAGCAGACGCTCGGCTGATGAAGCCCCCAGCTGGAGGCAGGAGAAGCCTGGCTCAGCCGCGGCAGAGCGACGGACCAGCCGGCTTCCAGCCACCCCCTCCCCCACcgacaccagcagcagcatcatcagCGGCAGCATCAGCGGCAGCGGCACCAAGGAGTCCCTCTGGCTTAGCGCCATCAGCAAGGAGTGCACCAGACCTCCCTCGGCTCACCTCGCCGTCGCCGGAGGTACCGCCGCCAAAAACAGCGGGAGCAGTAAGGAGCCGGCTGAGTGGCAGCCGAAGCTGAATGCCACTCCAAATGGACCAGGACTGAGAATCTGCAGCGCTGCTGAGATTAACACCGTAACTCCAGAGAAAAACAAGATCTGCAACCATCTGAATGACCAGAACACTCCTCCTGCACCAGTCCTCCCAGTATCAACCCCTACTCGCCCAGTATCTGACCAGAACACTGACAAATCTCCACTCCCAGATCAACCACTGCATAGCCCTGCTGGCCGGGgCTTTAAGAGTGAACCTCACACACCAGCTTCCTCTCAGAGTGGTAACACTTGGTCAGCCAACTCTTCCCCCACCAAGCCACCAAACCCTGTATATCCTGCTTCTGCAGAGTCTCGCCGTGGGTCTGCTGGACGGGCCTCTAAATGTGAGATTCCTATTGGATCATCACCCAACTGGAAAGTTCCAACTGCAGAGAAACAGCCAGGACTGTTTATTGAATCCAGTTATAGATCTGGAAATTCCAAAGAAGTCCCATCTCACCAGCTTCCACAGGAGTCAGCTCCTCCCAGAGTGAATCACTCAAACCCAAACCACCTTCTCCTAAACGGACCAAGAACGGTGTTTCTACAGAGCCAGGTTCTGAAAATGGAAATGTGTTCTTCACAAGCAGCCTCCCACCTGAAACATTATCACCATCAGctcctgctgcctgagaagcgtgtGGGGGAGggggcctccatccacatgATGAAGTCTCACCATATCCCGATGGAACAGATCAGTCAGGAGCTGCAGGAAATTGAGGAGCGGCTGGGTGATTTGGAGAAGGAAGGGATAGATCTGGAGGGGAGACTCCGGCGCTGTGAGGAGGaggGGAGCGGGGACATTCTGATGGATCCGTTGATTGTGGACTGGTTTAACCTGATCCGAAAGAAGCAGAGTTTCATACGGAGGGAATCTGAGCTCATGTACATAGCAAAAACCCAAGATTTAGAGGAGCAGCAGCCTGGAGTGGAGGGAGAGCTCAGGAGACTGATAAATAAACCAGagcatctgaaaagcactgcagagagaaagagggaggcgTATCTGATGAACCGGCTGGTAGAGATTGTGAACGACAGGAACGCCATTGTGGAGGGACTGGAGGAAGACCGCCTGAGggaggaggaagaggatcaGCAGCTGAATGAAATGATGCAGAGACTGGGTCTgaagaaactaaaaaacaagAGGAAGTCCTCCTTCTCCAAGCTGTTCAGACGCAGGAGTAAAAAGGTCCTGGTGGAGAAGTCTTCAGGGTGATCTTCAGGAGGGCAGATGGTTGGTGATCTTGTGGATCCTGCTTCAAA

Function

symbol description
micall2a Predicted to enable metal ion binding activity. Is expressed in several structures, including cardiovascular system; lateral line; neural tube; ventral mesoderm; and yolk syncytial layer. Orthologous to human MICALL2 (MICAL like 2).
micall2 Enables filamin binding activity. Involved in positive regulation of protein targeting to mitochondrion. Predicted to be located in several cellular components, including bicellular tight junction; neuron projection; and recycling endosome. Predicted to colocalize with stress fiber.

NR:

description
PREDICTED: MICAL-like protein 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682876.1 True 3265 mRNA 0.54 20 34034500 34076513

Neighbor

gene id symbol gene type direction distance location
LOC103027444 NA coding upstream 10298 34015702 ~ 34024202 (+)
ints1 ints1,LOC107703394,LOC107572041 coding upstream 35759 33939434 ~ 33998741 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding upstream 149855 33817531 ~ 33884645 (+)
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 685832 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 815664 33099446 ~ 33218836 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 130339 34206852 ~ 34244019 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding downstream 169639 34246152 ~ 34256116 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding downstream 180051 34256564 ~ 34271331 (+)
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding downstream 209574 34286087 ~ 34321859 (+)
card11 card11,LOC107592484 coding downstream 1067762 35144275 ~ 35237634 (+)
G201786 NA non-coding upstream 9047 34024322 ~ 34025453 (+)
G201722 NA non-coding upstream 127022 33816101 ~ 33907478 (+)
G201725 NA non-coding upstream 161963 33871849 ~ 33872537 (+)
G201708 NA non-coding upstream 329620 33704346 ~ 33704880 (+)
G201704 NA non-coding upstream 364209 33670082 ~ 33670291 (+)
G201800 NA non-coding downstream 2028 34078541 ~ 34078751 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding downstream 84932 34161445 ~ 34194241 (+)
G201830 NA non-coding downstream 231462 34307975 ~ 34309433 (+)
G201851 NA non-coding downstream 325084 34401597 ~ 34401908 (+)
G201824 LOC108257387 non-coding downstream 329108 34405621 ~ 34422325 (+)
psmg3 psmg3 other upstream 219514 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 759593 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 1056590 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 1106581 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1746697 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 1029525 35106038 ~ 35124618 (+)
G202336 NA other downstream 2512935 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 2906810 36983323 ~ 36993332 (+)

Expression


Co-expression Network