LOC111195503


Basic Information

Item Value
gene id LOC111195503
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9544700 ~ 9559107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683013.1
AGCACGTGCAGAGACACACATGCTGAACCTCGCCGAAAAGTGAAGCGCTtgtggaaagaaagagaggaagagaggtagagagaaagagagagagaaaacagagaaaaaaagcgAGAGAGTCGAATCAGATCAGCGGAGAAGAAAAGAACCGGCTGGGTTTCACAGCAAAAAGCGGACACGTTTGATTttaaacgagaaagagagaaagagagagaaaaacagagacagagaggaggagaaggaccGTGTTTACCGGGGCTGTGGTGTTGTTGTCCCACCATATACGACCACCCCTCCTCAAACAAGGGATGCAGTCGCTTGGCAGTCGCTCTGAATGGCCTTCACGAGCCTCCCTGTCTTCCAACATGCACTGCCTGTTCAGCGAGAGTGATCAGACAGAGGATGAGGTCTTGTCAGAGGCATCTTCAGAGGGAGATGTTGTGGCTGGTTTGGGCAAGCCCAGTCCTGAGCCCTTCTCCAGGGAGCTCACACTCAGGCCCCAGGCACATTTAGTCTGTGGAGATCAGCAGGCCTCCAGAGTAGAGAGTGACCAGACAGGCCACAGGCAATTGACCTGTGTATCATCATCTAGGACTCTGACAGAACGAGATCTGGCTTTTTCTCGCAAATGTGCAGAGCTGCAAGGTTATATTAGaccactgctggagctgctgaatGGATTAAAAACAGGGAGATATGACAGAGGTCTGAGCACATTCCAGCAGAGCGTTGCTATGGACCGGTTGCAGAGGATTGTTGGGATCTTGCAGAAACCTCAGTTGGGAGAGAAGTACATGCGCACGCTTCTGCAGGTGGAAATGATGTTGAAGGTTTGGTTTCCCCGGGTTTTACCTACTGATCCTAATTCCACCTCGCTGTCCCAGGACTCCAGTGCTGCCAGCCTGCCACCACGCTGGCAGCAGAACCAGCTGCCCGTTAAGAAACGTCGATTAAGCTGGTCAGACTCCGAGACAGGTCTGCCAACCTGCAAACAGTCTCGAGATGAAGAGCCAGAACACCCCAGTCCCACTCCCACCAGTTCAGAGCGTGTCACCTGTACTGGGGCCACCTCTAGTGCacaaacaaaagaagaagatgCAGTATTGAGACACCAAGGACCAGAGACGTCAGAATCTGGAGGTGGGAGCTGTTCAGACACTCAGGACTCTTCTGTCTCCTCCACCACCCCAACTTCAGACCCCGGCCAGGCCACTGGAAAAAGAGAGGTGGCAGTTTCTCTCCGCACACGCAAATGGGTTCAAGATGTGAATAGGGGGCTGCCAAAAAAGAGAGCTCATCAGAAATCCAGTTTCATAGAAAAGCAAAGCACATAGCAGTAGGCAGGTCTCTTTACCTTTTGTTAAGAAATTCATGAAGTCATGAAGTAATATTGGGAACTCATTGCAATTTCTGTGAAACAACAAAAGACGCTAGTTCAGTATGTGTTCAGATCACCTAGGTCGGTAAAATCCTACAGTTTTGCCGTAAATAGCAGGATAAATGGCATTTCTGTGGAAGTCCAATCAGTGATTATAAGTCCTGAACGGCCCCAGTGAAAGGTGTACGCATAAGTGGCTGAACTTCACTTCTTCAGTATCTGTATGTCATCTTGTACAAAATCTTGAGCAGCGAAACGAGTCGCTGAAGCACACTGAAGCTTCTAAAACACTCTGCTGTTACTGCCGAAAAATGCTGACCTGTTCTAGTTTACACCATTATACCATTTGCTGACAAACAGGCAATCTGCAGATATGTACTTTTGGTAAACTACAGCACTGTTGCACTCTTAAGATCACAAACAACCTTAACCATCTTCTTCTTGAATTGTAAACATCCATACGCAAAACAAGTCATACGCAAAGTGAATGGAAGAGACTTTTACACATATagatctttttttaaagataaaaacaattatttaacatcGTTTCTATTTTGAATTGGATCATTACTTGAAGACACTGGACTCACTGAAAGCCTTAAGATGATACCAGAGAGCCAGTCTTTCATTACTGAGCAAATTCCTTCACCAGAACTTGatgttgtgtatttatttagtgGCAGAGAACATAATCTCCATTAGTTTAAAAGGTGTGACAAGTGACTTGTGAAATGCTTTTGTTAAATGTGAAACACGGAGGACATCATGGGAAAACTGTTTCATTGCCAAATACATCTTGCACATGTAAAGAGTACCATAcatgcttttttatataataataggaGGCTGTACTATTTATTTGTTCACTTTATCAGTATGTTTTTCATTTCACAAATACAGACAAATAGAGACAGTCAAACTGGAAGCAGgtagttattttagttttccttttGGGCGAGCTAAAcctttttatacagtatacataacctgtattgttttttgttaacTGTTTTTGTGATTAATATTTAGTCcatacagtgaacttaacacaCATTGGAGTCTTCTTCTTAAATCAGCTTCATCAATTCTGGGCTGATTTCACGTTTGTCAGTATGCTcttatacagtgccttgcaaaggGACCCCCTGAAGTCATCAGATTCATGTGGATTACACATGACAGTTATATAGTTTGTTCCAGACAGTATTTCATTGCAAGACAAATGCCCTATTTGTTAGCAAAATTCAGTTTGCACAAGTATTCAATCCCCTCAGGCCAGCGATTGGTAGAAATTCTAGCAGCTCTGCGCACTTTAGGATTGATCTTGGGTGGattcacaaacacaaaatattcttaactttatttattcatttacattttcgtttaagaaaatatttaaaaacaattggTATTATAATTTGAGCCATAGCAAACAGACTACTTTGCTATTCCAATACAAGttattaacattacattagcTGACATTGCATCCTTTTTTTCACTGTTGCAACaacaacaaagcacttttttaaataactcgTAATTGTTGAAGTAGTTCAACACTGATGTAGTATCTAATTTGATGAGATTACAAATTGAGATTGTTCCTACAGAACTGTTAGTATGTGTCCTTTATGTGtacataaagaaacaaaaatcaagaatttagaaaaaaaatctattctgGCTTTGGttactaaaatgtttaaatgcttaattttcctcCATTTTGCTCATCATTGCATTGATTTAACTGAATGTTGGACAAAAATTGAATGGAACTTCACATTGTTTATGATAAGTGTAGTAATGCtacataataaattaataaatacatttgtgaATCCATCAACTGCACTTAAATTTGGACATTCCATAACAAACAGCATTGTTCAGTCAGAAACTGAATCACAgattattttcttaattaatataCTTTAGGTGAACTAGTTTGAGGGTCAATCTTACAATATAATGACAGTACAAAATGTATTAACCTAATGACTTTTAAGGGGGTTGAATGCAAGGTCCTGTACTCTGGTTATAGAGCAAGGCTTTAGGCTGTTGGAGTTCATTTCAGTAGTTAAGAGGGATTCTACATTCTACAAAGAATTTCATGCTTTGTTTACTAACATGGAATATGTCAATATATTGTGACTCAGGATTAAACAGTAAGAATACAATGTTACAATAGGTTGTATCTGttaaggcacatttaaaaccTATAGGAGACTTGTGAGGACATGGTAATGTAGACACTGAACTTTGCCTTCACATGAGCATTACATTTGATTGTTTGAAAGAAACTGAAGTAGCACATAAGACACCGCTTGGTGTAGCAATATTAAAAGGGGAATGTACCTGTACCATTTCCAGGTTGGGCAAATGTCTACAGAATCTGGAATATCTGTATTGTTTATTGACTTTGCAGATGGCTTATGGAATCCCCTCATTTTCAGTTAACAGAAGTGGGTATTTGTTTGATATTGGTCTCAGGTATTGTACCAAGCAGATATTGTTCCCCATTTTTGATTGAGACACCTcataatacagtacagtataatgtaCAGTACTTCATCACATATTCTTAGTGTAatcttttatacagtatattacatatTGTGTTCTTCCCCTGTAAGTTATTTCTTTCATTGTATTGGAATTGCTTTTAATggatgttaaaatatttaacaaaagtCTGTTTTCAtatgaataaatgtttatttgtttttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683013.1 True 4115 mRNA 0.40 7 9544700 9559107

Neighbor

gene id symbol gene type direction distance location
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 195983 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 593135 8951493 ~ 8951565 (+)
trnav-aac_54 NA coding upstream 593325 8951303 ~ 8951375 (+)
trnav-cac_43 NA coding upstream 593515 8951113 ~ 8951185 (+)
trnav-aac_53 NA coding upstream 593705 8950923 ~ 8950995 (+)
LOC103027509 NA coding downstream 1456 9560563 ~ 9590910 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding downstream 83070 9642177 ~ 9677820 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 427695 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 621346 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 655884 10214991 ~ 10215062 (+)
G196329 NA non-coding upstream 117156 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 162151 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 205881 9338069 ~ 9338819 (+)
G196314 NA non-coding upstream 613341 8931149 ~ 8931359 (+)
G196286 NA non-coding upstream 695074 8849360 ~ 8849626 (+)
G196396 NA non-coding downstream 48415 9607522 ~ 9608821 (+)
G196411 NA non-coding downstream 152783 9711890 ~ 9712641 (+)
G196417 NA non-coding downstream 164696 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 166006 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 171671 9730778 ~ 9734673 (+)
mrps21 mrps21 other upstream 5052 9534429 ~ 9539648 (+)
G196232 NA other upstream 864730 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1139231 8143873 ~ 8405469 (+)
G195793 NA other upstream 2251007 7293313 ~ 7293693 (+)
tapbp tapbp other upstream 2417586 7120612 ~ 7127114 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other downstream 44220 9603327 ~ 9638916 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 141633 9700740 ~ 9704709 (+)
G196415 NA other downstream 161676 9720783 ~ 9721270 (+)
G196419 NA other downstream 181252 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 215272 9774379 ~ 9888217 (+)

Expression


Co-expression Network