LOC107197051 (LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034)


Basic Information

Item Value
gene id LOC107197051
gene name LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10545576 ~ 10563252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683029.1
CTTTCCCCTCTGTTCTCCACTCACTACCCTCCAGCCTGAGCAGAAGGGACCTGAATCTCCAGCAGCACCATGAACACCAGCTTCTCCAGCCGCAGCTTTGTCTCCTCCGGCGGGTCCATGAGGGCCAGTCCCCTGCTCTCTGCCTCCAGCGGAGCCCGTCTGGGCAGCATGAGGTCTGGCAGCGTCTACGGTGGAGCCGGAGGATCTGGGGTTCGCATCTCCACAGCCAGCAGCAGTGCAAGCGGCTTCAACCTGGCTGATGCCGTTGATGTGTCCGCCAACGAGAAGGCCACCATGCAGAACCTCAACGACCGCCTGGCCACCTACCTGGAGAAGGTGCGCTCTCTGGAGAAGGCCAACGCTGACCTGGAGCTGAAGATTCGCCAGTTCCTGGAGAGCAAGGCGTCCCCCAAGGCTCGTGACTACTCTGCCTTCTACGTCACCATCACTGACCTCCAGGCCAAGATCCAGCATGCCATCACAGTGAACGGTGGAATCTACCTCAGCATTGATAATGCCAAGCTGGCAGCAGATGACTTCAGAGTCAAGTACGAGAACGAGCTCGCTATGAGACTGTCTGTTGAAGCTGATATTGCTGGTCTGAGGAAGGTTCTGGAGGACTTGACTTTGGCCAGGTCTGATTTGGAGATGCAGGTTGAGGGGCTGAAAGACGAGCTGGTCTACCTGAAGAAGAACCACGAGGAGGAGCTCTTGCTGGCACGCTCTCAGATGGGTGGGCAGGTGAATGTGGAGGTAGACGCAGCACCACAGGAAGACCTCAACGCCGTCCTGGCTGGAATCCGTGAACACTATGAAAGCGTTGCCTCCAAGAACCGTAAAGAACTTGAGGCCTGGTTCCAGACCAAGAGTGAAGCTCTGAACAAAGAAGTCTCCATCAGCACGGAAACTCTCCAGACGTCCAGATCTGAAATCACAGAAGTCAAGCGCACACTTCAGAGTCTAGAGATCGAGCTGCAGTCTCAGCTCAGTATGAAAGCATCGCTTGAGGCCACCCTCGCCGAGACACAGAACCGGTACGCTAGAATGCTCTCTGGCTACCAGGTACAGGTAACCAGCCTGGAAGAGCAGCTGGTGCAGCTCCGTGCTGATTTGGAGCGCCAGGGTCGCGAGTACCAGATGCTGCTGGACATCAAGACCAGACTAGAGCTGGAGATCGCTGAGTACAGAAGACTTCTGGATGGAGAgaccaccactactactaccaGCTCCTCATCATCAACCACTCGCAAGGTGGTGATTGTCACAGAAGAGGTAGTCGATGGCAAAGTGGTCACttcatcttcctcctcctccagtgAGACCAAAATAATCAAGTGAGGATCCCATAAACCCCAACTTACTTAAAGACCTCAAGCCCTATGAAGTCAATCCTCAGTGCTCATAGAGATCAATGAAATAAAGAGGTTAAATAATGAA

Function

NR:

description
PREDICTED: keratin, type I cytoskeletal 13-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683029.1 True 1437 mRNA 0.54 8 10545576 10563252

Neighbor

gene id symbol gene type direction distance location
LOC107197050 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC108438409 coding upstream 6227 10536480 ~ 10539349 (+)
LOC103044360 LOC108438405,LOC108438407,LOC107753917,LOC107727715,LOC107666325 coding upstream 27268 10515795 ~ 10518308 (+)
trnap-agg_20 NA coding upstream 317773 10227734 ~ 10227803 (+)
trnap-agg_19 NA coding upstream 318082 10227422 ~ 10227494 (+)
trnap-agg_18 NA coding upstream 318400 10227106 ~ 10227176 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding downstream 7051 10570303 ~ 10573156 (+)
LOC103042831 LOC108438410,LOC108257051 coding downstream 30483 10593735 ~ 10598163 (+)
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding downstream 47222 10610474 ~ 10626417 (+)
LOC103040077 NA coding downstream 177635 10740887 ~ 10771033 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding downstream 232870 10796122 ~ 10803111 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 60811 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 75428 10469798 ~ 10470148 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding upstream 282197 10263037 ~ 10263379 (+)
G196572 NA non-coding upstream 283733 10261574 ~ 10261843 (+)
G196570 NA non-coding upstream 297310 10244141 ~ 10248266 (+)
G196649 NA non-coding downstream 64115 10627367 ~ 10628051 (+)
LOC111195506 NA non-coding downstream 69103 10632355 ~ 10637265 (+)
G196686 NA non-coding downstream 215898 10779150 ~ 10781295 (+)
G196687 NA non-coding downstream 221908 10785160 ~ 10811742 (+)
G196697 NA non-coding downstream 275662 10838914 ~ 10856867 (+)
G196633 NA other upstream 53475 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 484477 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 657359 9774379 ~ 9888217 (+)
G196419 NA other upstream 804808 9740359 ~ 9740768 (+)
G196415 NA other upstream 824306 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 447789 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 838903 11402155 ~ 11417703 (+)
polr2k NA other downstream 988408 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1124147 11687399 ~ 11746235 (+)
G197106 NA other downstream 2152116 12715368 ~ 12774496 (+)

Expression


Co-expression Network