LOC111195511


Basic Information

Item Value
gene id LOC111195511
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13041191 ~ 13043435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683066.1
TTCTAAAATGGGCACCTCATAAACCTAAGAATGATGTATAGAATGTGATACATGGTAACTCATCTTACCAACAAAATAAGCCCCTCCCTCTTTCACTAGTATTTAACATGAAGGATTGGGCTAGTACAGCTCACACCTCAGCAAAAGCCAAGACTGGAATGATGGGGTGGATGTGCCGTTGCCTTGTCACCTGCTGGATGTGGTGTTCTCTTCTCTCCATGCTGAATGCAGAAGAAGAGCCAGAACTAGGTGGGCCAGAAGAATGCAACAATGCTCACTTCATACCTGGATACAACCTTGGAGGAGAGGGCTTTGACGTTGTGAAGATGGAGCGAAAAGGGTCTTTCGTGATCGACATGGAGAAGTGGGACATAGGAAACGGTAGTTGCCGAATGTATCCGAACGCatatttaaagaatgtaaagCAGAAGATACCGGCAGCTGTGACCTACTGGAGATCCctctcaaaatgtgcaaagaaGGTTGGCAGCTTGATTTATGACTCCAGTGAAGCTCTCGTGAAAGGTTCTACCTCGTCAATTTCGAACAACTGGAAAATTGGACTAGATGTGCCTTTGAAGGCTTCGGTTTCTTTAGGAGGCACTCATTCCCGTGAAGCAACATATGCAATGGACAAGTCCAAAGAAGACAAGTACAGTTTCACCAAGCATGTTGTCAAATGCAGCCTCTACAGCTACAAAATAGCATCTTCACCACCACTGCATCAGGAGTTTCTTCAGGCTGTTAGGTCTCTTCCACcagaatataataaagaatCTTATCAGGGCATCATTGACATGTTTggcacacactataccacaggAGTGGAATTAGGTGGGAGGATGCAAGCGGTAACAGCTATTAGAACCTGTCAAGCATCAATGAGTGGCCTTACTGAAACGGCAGTTAAAGACTGTTTGGATGTGGAGGCATCGGGGACATACAAGGGTGTCACCCTGAAAGTAGAGGACCACCACTGTCAAGAGCTAAAGAAGAGACTGAACACAAATGATAAATTCAGCTCAATGTTTAATGAGCGACAGACAGACATCATTGGAGGCAACATCAATGGTGAGGATATCCTTTTCTCTTCTACTTCACATCCAAATGCACTAAATGCTTGGCTGGAATCTCTGAAGACCATCCCAGATGTGGTAATGTACTCTCTTCAACCCCTGCACTCCGTGCTGGATAACAAGCACCCTGCCAAGAAAGGACTCAAGAAAGCTATTGAGACGTACATCCttgaaaatggtttaaaaaatgtttgctcTGAGTCTTGTAAGATTGGGCATCGCACTAATCCAAGGGATCGCTGTGCCTGTAACTGTGAAACAAGTCAGGTTATTACGGCCAACTgctgtcctgctgaaaaaaatctaGCCACGCTGAAGGTTTTCAAGCTTAGGGCCAACAACTTATACGGAGACCGATGGACTGAAACTGATGGCTCGGTTGAAGTAACGTTTGGAGAAACAATCAGACGCACCAAAGTGATTACAGATGACAACAATCCCGACTGGAGAGAAACTTTTGAGTATGGTCCTGTCAAGCTGTCTATCAGTAAACAGCTCACTTTCAAAGTATACGATGCAGACACTTACTGGAACAGTGATCTTCTTGGACAGTGCTCCTTTGACCTGAGAAGTGGAGATGTGACTGAGACATGTTACTTTCAACATGGAACCTTTGTTTTCTCCTATTCTCTAATTTGTGCTCCCAGTCTGCAGGGTAAACGGTGTGAAAATTATAGTCGTTCTCCAACGGACGCCAAACTGGCCAAAATATTCCACTCCAGAAACGGCATTCTGATTAAAGATATGTGGAAACTCCAGGCAGCCCAGAATAACTCCAGTAAGCTCTACTATAAGAGTGATTATCTGTAACAGCAGAACCAGATCATGTCCGGCAGTTATGTTGCTTAAACAGCTTAGCTCTTACTGCTTGTTTGACAAatcaaaaatacagctctggaaatgattaagagaccatttcagttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683066.1 True 2000 mRNA 0.44 3 13041191 13043435

Neighbor

gene id symbol gene type direction distance location
LOC111195514 NA coding upstream 10301 13028908 ~ 13030890 (+)
LOC103030274 NA coding upstream 41684 12997589 ~ 12999507 (+)
LOC103028905 NA coding upstream 136565 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 144739 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 252413 12784178 ~ 12788778 (+)
LOC111195512 NA coding downstream 27048 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 42311 13085746 ~ 13087926 (+)
thap7 NA coding downstream 46082 13089517 ~ 13094495 (+)
LOC103031854 NA coding downstream 55602 13099037 ~ 13112053 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding downstream 71066 13114501 ~ 13115971 (+)
G197213 NA non-coding upstream 7901 13032083 ~ 13033290 (+)
G197206 NA non-coding upstream 44316 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 98907 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 100109 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 102550 12938357 ~ 12938641 (+)
G197227 NA non-coding downstream 53117 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 70056 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 97734 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 100548 13143983 ~ 13144700 (+)
G197305 NA non-coding downstream 118858 13162293 ~ 13187854 (+)
s100a14 s100a14,LOC108442988 other upstream 76842 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 112664 12889358 ~ 12928527 (+)
G197106 NA other upstream 266695 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1294956 11687399 ~ 11746235 (+)
polr2k NA other upstream 1486608 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 280951 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1233356 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1422830 14466265 ~ 14468882 (+)
G197665 NA other downstream 1750985 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2718488 15761923 ~ 15789854 (+)

Expression


Co-expression Network