LOC103041798


Basic Information

Item Value
gene id LOC103041798
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13085746 ~ 13087926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683069.1
CCCTCCCCCTTTTCACTAGTATTTAACATGAGCAATTGAGCTGGCACATCTCACATCTCAGCAAATGAAAAAACAGaaaTGATGGGGTGGATGTGCCGTTGCCTTGTCACCTGCTGGATGTGTTCTCTTCTCTCCATGCTGAATGCAGAAGAAGAGCCAGAACTAGGTGGGCCAGACGAATGCAACAATGCTCACTTCGTACCTGGATACAACCTTGGAGGAGAGGGCTTTGACGTTGTGAAGATGGAGCGAAAAGGGTCTTTCGTGATCGACATGGAGAAGTGGGACATAGGAAACGGTAGATGCCAAATGTATCAAAACGCATATTTGCAAAATGTAAAGCAGAAGATACCTGCAGCTGTGACCTTCTGGAGAACCTATACAAAGTGTTCAAATAAGGCTGCCAGCAAGAAATATGACTCCAGTGAAGCTCTCGTGAATGACTCTACTTCGTCGATTTCAAACAACTGGAAAGCTGGACTAGATGTAAAAGTGAAGGGTTCACTTGGAGGCACTCATTCCCGTGAAGCAAAATATGGTATGGAGAAGTCCAAAGAAGACAAGTACAGTTTCACCAAGCATGTTGTTGAATGCAGATTATACAGCTACAAAATAGCATCTTCACCACCACTGCATCAGGAGTTTCTTCAGGCTGTTAATTCTCTTCCAAAAGAATATAATTTAGAATCTTATCAGGGCATAATTGACATGTTTggcacacactatactacaggAGTGGATTTAGGTGGGAGGATGAAAGCGGTAACAGCCATTAGAACCTGTCAAGCATCAATGAGTGGCCTTACCGACACGGCAGTTAAAGATTGTTTGGATGTGGAGGCATCGGGTACGTACAAAGATGTCACTCTGGCTGCAGAAGCCCACCACTGTCAAGAGCTAAAGAAGAGACTGAACACAAATGATAAATTCAGCTCAATGTTTAATGAGCGACAGACAGAGATTATTGGAGGCATCGTCAATGGTGAGGATATCCTTTTCTCCTCTGAGTCGCATTCAAATGCACTAAATGCTTGGCTGGAATCTCTGAAGACCATCCCAGATGTGGTAATGTACTCTCTTCAACCCCTGCACTCCGTGCTGGATAACAAGCACCCTGCTAAGGATGGACTAAAGAAAGCTATTGAGAAGTATATCCTTGAAAATGCTTTAGAAAGTGTTTGCTCTGAGTCTTGTAAGATTGGACATCACACTAATCCAAGGGATCGCTGTGCCTGTGACTGTGAAAGAAGTCAGGTTATTACGGCCAACTgctgtcctgctgaaaaaaatctaGCCACGCTGAAGGTTTACAAACTTCTTGCCAATGATTTATACGGAGACAAATGGACTGAAACTGATGGCGCGGTTGAAGTAACATTTGGGAAAACAGTCAGACGCACCGAAgtgattaataataacaacaatccCCGCTGGAGAGAAACTTTTGAGTATGGTCCTGTCAAGCTGTCTATCAGTAAACAGCTCACTTTCAAAGTATACGACGCAGACTCTTACTGGAACAGTGATCTTCTTGGAGAGTGCTCCTTTGACCTGAGAAGTGGAGATGTGACTGAGACATGTTACTTCCAACATGGAACCTTTGTTTTCTCCTATTCCCTAATTTGTGCTCCTAGTCTGCAGggtaaacaatgtgaaaattATAGTCGTTCTCCAATGGACGCCAAACTGGCCAAAATATTCCGCTCTAGAAACGGCATTCTGGCTAAAGATATTTGGAAACTCCAGGCAGCTCAGAATAACTCCAGTAAGCTCTACTATAAGAGTGATCATCTGTAACAGCACAAAAAGACCAGCAGTTGTGCTACTTGCTGTTGAAAAGCTTAGCTCATTTCGCTTATTTGACAAATCTAAAGCttgtttaaaacaatacataattCTGCTTTGACATTTGGTTTTATAAATGCTTGCTGATTTTGCTTTGCAAGATGTACTtaattaaatgaaagcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683069.1 True 1970 mRNA 0.42 3 13085746 13087926

Neighbor

gene id symbol gene type direction distance location
LOC111195512 NA coding upstream 13089 13070483 ~ 13072657 (+)
LOC111195511 NA coding upstream 42311 13041191 ~ 13043435 (+)
LOC111195514 NA coding upstream 54856 13028908 ~ 13030890 (+)
LOC103030274 NA coding upstream 86239 12997589 ~ 12999507 (+)
LOC103028905 NA coding upstream 181120 12898727 ~ 12904626 (+)
thap7 NA coding downstream 1591 13089517 ~ 13094495 (+)
LOC103031854 NA coding downstream 11111 13099037 ~ 13112053 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding downstream 26575 13114501 ~ 13115971 (+)
chtop chtop coding downstream 201788 13289714 ~ 13298879 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 213969 13301895 ~ 13319691 (+)
G197213 NA non-coding upstream 52456 13032083 ~ 13033290 (+)
G197206 NA non-coding upstream 88871 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 143462 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 144664 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 147105 12938357 ~ 12938641 (+)
G197227 NA non-coding downstream 8626 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 25565 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 53243 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 56057 13143983 ~ 13144700 (+)
G197305 NA non-coding downstream 74367 13162293 ~ 13187854 (+)
s100a14 s100a14,LOC108442988 other upstream 121397 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 157219 12889358 ~ 12928527 (+)
G197106 NA other upstream 311250 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1339511 11687399 ~ 11746235 (+)
polr2k NA other upstream 1531163 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 236460 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1188865 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1378339 14466265 ~ 14468882 (+)
G197665 NA other downstream 1706494 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2673997 15761923 ~ 15789854 (+)

Expression


Co-expression Network