LOC103042102 (LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678)


Basic Information

Item Value
gene id LOC103042102
gene name LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13301895 ~ 13319691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683075.1
TGCGCTTGGAAGCGAGCAGAGCTGAGAGGAGTCTGCAGAGCGGAGGACAGAGAGAGCAGCCGCTGCTTATAGCAGGAGTTACTCAAACCTgtgatattgtttatttatctgtgtGACTGAACGGGTTTCACGGTCTGTCCCCTCCGAGGCTTTATTCAGGGCAGGCAGGCGATGCTGGAGGCTATAAAAGTGACCGAACGCCTCCACTGGCCCGAGACAGAGATGGCTAAGAAGTGTGTGTTGAGTCCGATGGAGAAGCCGCTGAGCCCTAGCCAGCTGTACCTGGAGCACTGGTCTCCAGGTGTGCTAAAGGACCTGTTTGGAACCAGTAGCTACAATGTTATTTTGCAGAACGAAGAAGAGGAACAACTCAGTCCCAAACACTCCCCTTATAGACGGCCCAAAAGAGCACAGCACCTCATTTCCACAGCCTCGAGAAAGACTGGTGGGAGGCCTGTAGTGTTAACCAGGCCCAGAGAGGGATACAGGAACGTCAGCCAGTCACAGCTCTTCTCCAGCAGCACTCGCTTTGGGAATAATATCACAGTCCTTGGAAGTCCCATTGGATTGACCCCCCGCCCAGTCCCCAGACCACAACGAAGTTCCCAGGCAAGCTCCTCTCGAGTCAGACTACCTCTGCTGGCCAAAGCAGGCTCTGTGAGAGATTCTGAAAACTCACTGAAGAAGCTATGCATCCTCACAGCCATAAAGCCATCCAACGTGGACAGTGAGAAGACCCGCTTTTTCAAGTCAGACTTCACCTACAACCCCCAGTTTGAGTACAGCAACCCGGTGGCTCCACAGGTGCTGGAAAAACACAACAATGCTTCTGACCGCTTCCTCACACAGGCTGTGCGAATCATGGAGCTTGCGCTGCAGAAGTACGGGAACTATGAAAAGTTTGAACAAGCCACTGGAGGGAGCCTGCTGACCAAGAGCCGAATCTGGTCCCATGTGAAGAAGTACATGGAGAAAGAAGGCTGTGTGGGGGAGATAGTGGTGCACTTGACGGATGACCTGCTGTCCAGAGCCTCCATGACTGTAGTAAATGGCAGACCAACACTGACCATAAACATCTCCACAGCCAGAGAGCAGTGGCTTGAGGGAATGCTGAGACACGAGATTGGCACACACTACTTCAGAGGCATCAATAACAGCCAACAGCCGTGGAACAGCGGGGCAGGGAGGAAAAAGCTGGGCCTGAGGCCTTTAAACCCCACAGAGGAGGGTCTGGCCAGTATCCACAGCGTCCTTTTCCGCAGAGACCCCACACTGTGGCGAGCTGCACTCCTGTACTACACCGTTTACCAGGCCAGCCATATGAGCTTCTCTCAGCTATTCCGCGACCTGGGACGCTTCGTCCACGACCCAAACACCCGCTGGGACTACTGCGTCCGGTCCAAGCGAGGTCAGACAGACACCTCACAGCCAGGCTGTTTCAGTAAAGACCAGGTTTACTTGGATGGAATCCTGAAGATcctgagacacagagagaagatTGATTTTCAGCTCCTTACTGCACTGGGCAAGGTGTCCTATGAGGACGTAGAGCGGCTGAAGGGTTTGGCGGTGATGGAGCATGTGCGTATCCCTCACTTCCTGCAGGATCAGAGCCGTTACTCTGAGCAGCTGCAGAAGATCATGGAAGTCAACCAGCTAACAGACGAGGAACTCCGTATGCTCATTTGAGCTCAGTCACACCCTTAGAGCCAACCTCGAGCTGACCAATATAAGCTGAGAAATCTGACACGTATCCTATTGTGGCAAACCCTGCATCTACCCAGCCTACGAGTGATGCACTTTTAACCTAAGTGTACTTTAcaccctgtttttttctgtccaaAGATAAACATATTGCTATTTCTGTGGTGTTTTGCTGTCCTTGAGGTTTAGGTAACAATGACATTTGACCTGCAGGTGaagacaaataaaacacaacacagcacagcaccacCTGCATGCCATGCACAGTAatacacaattttttaaatcCAGTGCTGTAAAACTAGCGGGAGGCTAAACGAGTGCCAATTTTTCATCCATGTGCATGCctgttctttatatatatatatatatattatatatatatatatatatatatatatatatatataatatatatatatatatatatatatactttaactATATGCTACTTTCTGTGTTTGTATTAGAAACTGATAATCAGCAGATAAACAAATTTACATGTTTTTCCTTGTTTGCATAAAGTGAGCGTTAAGTGATTTGTGCTTTATATATTAAGCTTCTTTTGATTTGCACTGAAGCTACATAAAAAATGTAGCTAACACGTAATGGAAGTAATAGTATGACACAATATCTAAAAGTATTTATATGTTGAAAACTgaaatttacattgtaaatgtggGGAGTATTTGGAATGCAGCCAGAAACATGCATGCAGCTTTTTTCATAagaatcttgtttttttctcccaaacaacactgaaaacactgatTATTCTTAAATGGAAGGCTAAaaccattacttgttagctacattagcttcagAGGTCCCgtgcaaaactaaagaaacagaCTTCTGACACAAAACAATGTCTTGGCTGTTTGgccatttgtttttatttttttaccacacCGTCGTACTATAAAATAAGGTTAAATTAATTGTGAATACTGATAAAAAAAGCCCAGTTTAGTATTGATGTAGAGTATTAAACTAAAGCTCCTAGAGATAAATGACAGTTTATATGTACACCTTATTTGAAAACTTTAAACAGCATTACTAAAATGTGCTTTCAGACTACTTAAGCCAGAAGATTTTAAGACCGTTAGAgactaattattattgtttaaaaaccttttttatgaAGTGGACATCTTGTTTAAGCACACCAGCGGTTGTCACCAGCATGCCTGCTGGGACCCATTCTTGCACATATTAAACGTTAAGCTGCTCTTTTACCAGCATTCTTTTGTAGACTAAGGTTTTCCTATTTTGTATGCATGGATTTTGTGTTAGAAATTGCAATCCTTCAATGAACCGCTGTTTAGTTTTAATGTTCTGTATTGAGGACTGTATTCTGTACCAGTGCAGTTGTGTATTACTCTGGATATTTTAACTAAACTCTTCTAGATTGTTGGTTACTAAGACTTACTAAGTTTTCTTTACTGACACTTTATGGACTGGGAATCCTCTggggagagggaaaaaaaaggaaacaaatccACGCGTGCATAATGCGTGGGAGAATAAAGGTGCTTTATTCTGTTTTCATTTAGACTGCATACACGGACTATAGTAATAACCCACATGGTAGTATCATCATATCTAtgtttataaacatgtatatttatataccactgtttcactgtgtttctcttttatttgaaaaaagaaacataacTGTGGAATAAACGGACAGAAACAATTCAA

Function

NR:

description
PREDICTED: uncharacterized protein KIAA0895-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683075.1 True 3414 mRNA 0.43 7 13301895 13319691

Neighbor

gene id symbol gene type direction distance location
chtop chtop coding upstream 3016 13289714 ~ 13298879 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 185924 13114501 ~ 13115971 (+)
LOC103031854 NA coding upstream 189842 13099037 ~ 13112053 (+)
thap7 NA coding upstream 207400 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 213969 13085746 ~ 13087926 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 119801 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 135012 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 143608 13463299 ~ 13468103 (+)
LOC103043039 NA coding downstream 340196 13659887 ~ 13666328 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding downstream 350652 13670343 ~ 13794112 (+)
G197325 snapin,LOC106569889 non-coding upstream 17378 13281682 ~ 13284517 (+)
G197317 NA non-coding upstream 61722 13237460 ~ 13240173 (+)
G197305 NA non-coding upstream 114041 13162293 ~ 13187854 (+)
G197309 NA non-coding upstream 157195 13143983 ~ 13144700 (+)
G197308 NA non-coding upstream 160413 13141169 ~ 13141482 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding downstream 58356 13378047 ~ 13438504 (+)
G197340 NA non-coding downstream 94669 13414360 ~ 13473071 (+)
G197341 NA non-coding downstream 134128 13453819 ~ 13475449 (+)
G197406 NA non-coding downstream 246677 13566368 ~ 13567811 (+)
G197410 NA non-coding downstream 266542 13586233 ~ 13605958 (+)
s100a14 s100a14,LOC108442988 other upstream 337546 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 373368 12889358 ~ 12928527 (+)
G197106 NA other upstream 527399 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1555660 11687399 ~ 11746235 (+)
polr2k NA other upstream 1747312 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 4695 13324386 ~ 13362658 (+)
rpa3 NA other downstream 957100 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1146574 14466265 ~ 14468882 (+)
G197665 NA other downstream 1474729 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2442232 15761923 ~ 15789854 (+)

Expression


Co-expression Network