sdhaf3 (sdhaf3)


Basic Information

Item Value
gene id sdhaf3
gene name sdhaf3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14350057 ~ 14364677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683091.1
acaaaaataacagtaGAGAAGCTTCTGCTTCTGTTTGTGAGCAAGGACACGACTTGCGTAAACCTGCGTGAGAATGTCTTTTTGTAGCCGGTAatttatgtgtatatgtgttttttgtacCCACGTgactttattttcttgttttaatgGCTGCGCTTGGTCTTTACACTTTTGGAAAAGCCGCTAAATGATTATGAAGGGCATTTGAAGAGTTGTTGCTAAGCTAACATGTGCTAGTACTCCCTGTACTCACAGTACTACCAGTACTACTGCGGTCAGTTAACAGTGTTTACACTCTAAACCTCTGAATAAAGGGAATCTGGGTTACTAGCGACTCTTCTCCCGCTGCTATGGCCAGTCCAGCTCATGTATCCAGGGTCCGCTCTCTCTTAAAAATCCTGCTGCTGCATCGCTTCATGCCCATTGACCTCAGAGCCATTGGAGATCAGTATGTGAAGGATGAGTTCCACAGACACAAATCTGCTTCTCCAGAAGCTGCCAAACACTTCATGAAGGAATGGGAGAACTACAGAGATACCCTACAGACCCAGGTTCTGGAGGCAGTTGGAAACAAAAAGCTTGCTTTTGGGACTGACCTACCTGAACAGAAGCTGAAAGACTTTCAGGACGAACAGATCGGCCAGCTGTATGAGCTGATGCTGGAGTCTACCAAACCCAACCGACAGTTCCACATCCAGGAGGACAGCCCaccaacataaaataaaaactgcttaaaaaaagtgctttacaaaatTGACCTGCTTTTAAATCTATTCATCATATCCATGTGAATGAAATACATCAACACTTTTATTTTG

Function

symbol description
sdhaf3 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

NR:

description
succinate dehydrogenase assembly factor 3, mitochondrial-like

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683091.1 True 818 mRNA 0.43 3 14350057 14364677

Neighbor

gene id symbol gene type direction distance location
col28a1 NA coding upstream 10655 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 361119 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 445019 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 555945 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 683729 13659887 ~ 13666328 (+)
jarid2 jarid2 coding downstream 712867 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1036246 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 1100815 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 1227766 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 1250496 15615173 ~ 15632584 (+)
G197557 NA non-coding upstream 152992 14193174 ~ 14197065 (+)
G197555 NA non-coding upstream 174387 14175339 ~ 14175670 (+)
G197550 NA non-coding upstream 210929 14127431 ~ 14139128 (+)
G197547 NA non-coding upstream 275637 14069804 ~ 14074420 (+)
G197496 NA non-coding upstream 377314 13946514 ~ 13972743 (+)
G197609 NA non-coding downstream 11801 14376478 ~ 14376705 (+)
G197617 NA non-coding downstream 44817 14409494 ~ 14446246 (+)
G197630 NA non-coding downstream 127382 14492059 ~ 14492550 (+)
G197646 LOC107731557,LOC107754811,LOC107702657,LOC107672863 non-coding downstream 310844 14675521 ~ 14719538 (+)
G197657 NA non-coding downstream 372678 14737355 ~ 14745016 (+)
rpa3 NA other upstream 56989 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 987399 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1385708 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1421530 12889358 ~ 12928527 (+)
G197106 NA other upstream 1575561 12715368 ~ 12774496 (+)
tac1 tac1 other downstream 101588 14466265 ~ 14468882 (+)
G197665 NA other downstream 429743 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1397246 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1957265 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 1980440 16345117 ~ 16359668 (+)

Expression


Co-expression Network