ints3 (ints3,LOC107754816)


Basic Information

Item Value
gene id ints3
gene name ints3,LOC107754816
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15592443 ~ 15611187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683102.1
TTCCTGTAGGCCAGCATGCCCTGCGGAAGTTGAATTGTTGCAGTCGGAGGGTGAAAAAGCGGCGGAGAAACAAAAACCCGCAGAGAGAGAAACCCGGAGAGTGGGAGAGCGGGGCCGAGCACAGCGCGGCGGACACGCGGACAGCAGCCGGGGAGCGGGGGCAGAGCACAGCGCGGGGCCGGGCAGGGTCCGCGGCGCTTCAGCCTTAAGTGAAGCACCAGCGGGCGGCGGGGATGGAGACTTCAGCGGCCAAAGGCAGAGCGCAGGGGCGCCTGCTGGCGGCCACCAGCCTGGACGCGAAAGACGAGCTGGAGGAGcGGTTGGAAAGATGTGTAGCAATCACCACATCCATTACCAACGGACTGTCCGAAAGAGAAGCCAATGATGCCCTCACTGCCCATGTATGTAAGGGTCCTCAACAGCATGAGGAAGTGTGCCTTggcctgttcacactgctgctCACAGAGCCTCCACAAGCACAGCGATGCTACAGAGACCTGACTCTAGTCAACAGAGATGGCATGAATGTGGTTCTGGTCAAGATCAACCAGATACTCATGGAGAAGTTCCTCAAACTCCAGGACGTGTGTCGCACACAGTTGGTGTGGTTGGTGAGAGAGCTGGTAAAAAGTGGTGTTATTGGAGCAGATGGAGTCCTCATGACCCTCATGAAGCAGATTGCTGGTGGAGACATTACCAACAAAAACCTGTGGCTGGCTGAAAATGTGTTGGACATTTTAGTTGAACAAAGGGAGTGGGTCCTAAAGAGCGGTATGTTGGTGGCTATGTCTGTGTACACGTACCTGCGGCTCATAGTGGATCATGGAACCCAGAGCCTTTTAGCACTCCGCCAGAGAGAGGTGGACTTCTGCATCGGCCTCCTGAGAGAGAGGTTTATGGAGTGTTTTATCATCGGAAGAGATCTGGTCAGGCTGTTACAAAATGTTGCACGTATTCCTGAGATGGAACTACTGTGGAGAGACCTGCTGCACAATCCCCAGACCCTCAGCCCACAATTCacagGTTTGTTGCAGCTCCTCACCTCTCGTACATCCCGTAAATTCCTGGCCTGCCGCCTTACCCCTGATATGGAGACCAAGCtactgttcatgacctcaaggGTTCGATTTGGGCAGCAAAAACGCTATCAAGACTGGTTCCAGAGGCAGTATCTGTCCACAGCTGAGAGCCAGTCTTTGCGCTGTGATCTCATACGCTACATTTGTGGTGTCGTCCACCCTTCCAATGAGGTCCTGAGCTCAGATATCCTGCCCCGCTGGGCCATCATTGGTTGGCTGCTCACCACCTGCACGTCTAATGTTGCTGCATCAAATGCCAAACTGGCCCTGTTCTATGACTGGCTCTTCTTCAATCCAGAGAAGGACAGCATCATGAATATTGaACCAGCCATTCTGGTGATGCACCACTCCATGAAGCCCCATCCAGCTATTACTGCCACACTGTTGGATTTCATGTGTCGAaTAATCCCTCACTTTTTTCCACCGCTGGAGGGTCAAGTGCGCCAGGGTGTCTTTAACTCTCTGAATTTCATCATGGAGAAAAGGGTCCTGGCACACTTGGCTCCACTGTTTGATAACCCTAAGCTGGACCGTGAGCTTCGCTCCATGCTAAGAGAACGTTTCCCAGAGTTCTGCAGTTCACCCTCGCCACCCACAGAAGTGAAAATGGAAGAGTCCGTTCCCTTAGAGATGGACAATCACATACTGGATAAAGAGGACAATTGCTATGACAACACGGACGCTACCTTTAgtgatgatgaggaggaggtgAATAATAAAGGTAAAAAACGTGAGTTCAGGTTCCAGCAGATAAAGGAGACATATATAGACGAGCCAGCTGACATCACGCCGTATGTGGACCAACTAGATGAGACGCTGAAGGAGAAAGTGTTACAGTTACAGAAGGGCAGTGATACAGAAACACAATGCGAGGTCATGCAGGAAATAGTGGACCTTATTTTAGAGGAGGACTTTGAATCAGAGCAGATGTCTGCATTGGCCTCCTGTCTGGCTGAGCTGTTCAAAAGCCACTTCAGAGGGGATGTACTACCTGAGGAAATCACTgaagaGTCCCTGGAGGAGTCAGTGTGTAAACCCGTGTGTCTGATCTTCAGGAACCTGTGTCAGATGCAGGAAGACAACAGTGGCTTCTCTGTGCTGCTGGACATGCTTGCTGAGCTGTACCAGAAACAGCCCAAAATTGGCTATCACCTTCTGTACTACCTCAAAGCCAGTAAAGCGGCGGTGGGGAAGATGAGTCTGTATGAGTCGTTTGCTCAGGCCACAGCACTGGGTGACCTGCATACCTGCCTCATGATGGACATGAAAGCCTGCCAGGAGGACGATGTGAGGCTGCTATGTTACCTCACCCCCTCCATCTACTCAGAGTTCCCAGATGAGACCCTGCGGAGTGGGGAACTTCTTAATATGATTGTTGCTGTAATTGATTCCACGcagCTTCAGGAACTGATGTGTCATGTTATGATGGGGAATCTGGTAATGTTCCGCAAAGACTCTGTACTCAACATTCTCATTCAGTCACTGGATTGGGAGACATTTGAGCAGTATAGCACATGGCAGCTGTTCCTAGCCCATAGCATCCCACTGGAAACCATTATACCCATTTTACAGCACCTCAAATACAAAGAGCATCCAGAAGCCCTCTCCTGCTTGCTGCTGCAACTTCGCAGAGAGAGTCCCACTGAAGAAATGGTAAAGATGGTTCTAAGTCGACCGTGTCACCAAGAAGACCAGTTTACCACCAGCATCCTGCGGCATTGGGCAGCCAAACATGATGACCAGCTGGGGGAGCACATAAAGGCCCTGCTAATCAAGAACAACAACATGCCTCGCAAGCGGCAGAGCTTACGGAGCTCCAGCAGCAAATTGGCTCAGCTGACACTAGAGCAGATGCTGGAGCATTTGGACTGTCTGAGACTCAGTCTGAGCAACACCAAGAATAACTtCTTTACCCAGACGCCCATCCTGCAGGCTCTGCAGCATGTCCAGGCCAGCTGTGACGAAGCCCATAAGATGAGACACGGTGTGTCCGTCGCCCTGCTTGGCAGGTTCAGCGATCTGTTCTCCTTGGCTGAAGAGTATGAGGACTCCTCAAAGCCTCCAAAATCCAGACGTAAAGCTCCAGCCACTTCCCCCCGATCCAGAAAGGGTGCCGCTCCTCCGGCCAATGAGGATGACAGCGCCTCATCTAGCGCCTCGGAAGAAGAAGACTCTAAACCCAAAGCCCccaaaaggaaaaggaaatgcTCATCTGCAGTGGGCTCCGACAGTGACTGAGAGGAAACCAGCCATCTCTGCAAGCCCCACCCACAGCACCCCCACATTCACGCCATTCTTCTGTCGTGATGTCAATGGAGAATGAACCACCAGCCAATCATCTGCTCCAACCACTCAGGGCATCTTGCCCTTTCATAAAAGGAGGgacgctctctctttctgggaCTCGAATGCCGTTGGCTGGAGCCGGGAGACAAacccttttttttcctctccgcAGCACAAGTCTCATTGGCTGATTTGGGCTTGGGGTAAGGTTGGGTTTGAGGGTCTCTGGGATGTGCTGCACTTCGGAACTGAGACTGGCATGGACTGATAGAACCACAACAATACAGACAGCCCTGCGGAAAGAATCGTACCCAGGAGCTACACTTAATGTTGCTGTACTTATTGATGCCCCTTCTACGATTCAGCACTCTCATGATGTGTGTGAATGGAATAGCAAAAGCCCCCAAATGTAGATAATGAAAGTAAAATCCCTGCTACATGAGGTCGAGCAAAGGGATGATTTTACAGTATTGACCGCGGATGTTGTGTtggaaaaacagcaactttaaaagTACTCCAAGTCCACAAAGacgtattttattatttgatgaTGAACAGTCATTCGCTTTGTCTCTTAGAAATCCCTTTTTGTCCTGATTGGATGTGGTGACCCACTGGAGGTGGGACCTGGGATTTTGCAGGGAGGAAGACACTCCTCAGTgaatttttaccatgtttgcACTGCACACAGATGCAGAAATTGGACTGTATAAATGGAAGACTTCTGACATGTTGACAGACTTTTTAAGAAAATTGCTTTCTACTGACCTATTTTCGTAAAAAAAGATCATAACTATGTTAAAGGATTATGATATTAATAAAAAGGCGGGGAAAAATT
>XM_022683103.1
TCCTGTAGGCCAGCATGCCCTGCGGAAGTTGAATTGTTGCAGTCGGAGGGTGAAAAAGCGGCGGAGAAACAAAAACCCGCAGAGAGAGAAACCCGGAGAGTGGGAGAGCGGGGCCGAGCACAGCGCGGCGGACACGCGGACAGCAGCCGGGGAGCGGGGGCAGAGCACAGCGCGGGGCCGGGCAGGGTCCGCGGCGCTTCAGCCTTAAGTGAAGCACCAGCGGGCGGCGGGGATGGAGACTTCAGCGGCCAAAGGCAGAGCGCAGGGGCGCCTGCTGGCGGCCACCAGCCTGGACGCGAAAGACGAGCTGGAGGAGcGGTTGGAAAGATGTGTAGCAATCACCACATCCATTACCAACGGACTGTCCGAAAGAGAAGCCAATGATGCCCTCACTGCCCATGTATGTAAGGGTCCTCAACAGCATGAGGAAGTGTGCCTTggcctgttcacactgctgctCACAGAGCCTCCACAAGCACAGCGATGCTACAGAGACCTGACTCTAGTCAACAGAGATGGCATGAATGTGGTTCTGGTCAAGATCAACCAGATACTCATGGAGAAGTTCCTCAAACTCCAGGACGTGTGTCGCACACAGTTGGTGTGGTTGGTGAGAGAGCTGGTAAAAAGTGGTGTTATTGGAGCAGATGGAGTCCTCATGACCCTCATGAAGCAGATTGCTGGTGGAGACATTACCAACAAAAACCTGTGGCTGGCTGAAAATGTGTTGGACATTTTAGTTGAACAAAGGGAGTGGGTCCTAAAGAGCGGTATGTTGGTGGCTATGTCTGTGTACACGTACCTGCGGCTCATAGTGGATCATGGAACCCAGAGCCTTTTAGCACTCCGCCAGAGAGAGGTGGACTTCTGCATCGGCCTCCTGAGAGAGAGGTTTATGGAGTGTTTTATCATCGGAAGAGATCTGGTCAGGCTGTTACAAAATGTTGCACGTATTCCTGAGATGGAACTACTGTGGAGAGACCTGCTGCACAATCCCCAGACCCTCAGCCCACAATTCacagGTTTGTTGCAGCTCCTCACCTCTCGTACATCCCGTAAATTCCTGGCCTGCCGCCTTACCCCTGATATGGAGACCAAGCtactgttcatgacctcaaggGTTCGATTTGGGCAGCAAAAACGCTATCAAGACTGGTTCCAGAGGCAGTATCTGTCCACAGCTGAGAGCCAGTCTTTGCGCTGTGATCTCATACGCTACATTTGTGGTGTCGTCCACCCTTCCAATGAGGTCCTGAGCTCAGATATCCTGCCCCGCTGGGCCATCATTGGTTGGCTGCTCACCACCTGCACGTCTAATGTTGCTGCATCAAATGCCAAACTGGCCCTGTTCTATGACTGGCTCTTCTTCAATCCAGAGAAGGACAGCATCATGAATATTGaACCAGCCATTCTGGTGATGCACCACTCCATGAAGCCCCATCCAGCTATTACTGCCACACTGTTGGATTTCATGTGTCGAaTAATCCCTCACTTTTTTCCACCGCTGGAGGGTCAAGTGCGCCAGGGTGTCTTTAACTCTCTGAATTTCATCATGGAGAAAAGGGTCCTGGCACACTTGGCTCCACTGTTTGATAACCCTAAGCTGGACCGTGAGCTTCGCTCCATGCTAAGAGAACGTTTCCCAGAGTTCTGCAGTTCACCCTCGCCACCCACAGAAGTGAAAATGGAAGAGTCCGTTCCCTTAGAGATGGACAATCACATACTGGATAAAGAGGACAATTGCTATGACAACACGGACGCTACCTTTAgtgatgatgaggaggaggtgAATAATAAAGGTAAAAAACGTGAGTTCAGGTTCCAGCAGATAAAGGAGACATATATAGACGAGCCAGCTGACATCACGCCGTATGTGGACCAACTAGATGAGACGCTGAAGGAGAAAGTGTTACAGTTACAGAAGGGCAGTGATACAGAAACACAATGCGAGGTCATGCAGGAAATAGTGGACCTTATTTTAGAGGAGGACTTTGAATCAGAGCAGATGTCTGCATTGGCCTCCTGTCTGGCTGAGCTGTTCAAAAGCCACTTCAGAGGGGATGTACTACCTGAGGAAATCACTgaagaGTCCCTGGAGGAGTCAGTGTGTAAACCCGTGTGTCTGATCTTCAGGAACCTGTGTCAGATGCAGGAAGACAACAGTGGCTTCTCTGTGCTGCTGGACATGCTTGCTGAGCTGTACCAGAAACAGCCCAAAATTGGCTATCACCTTCTGTACTACCTCAAAGCCAGTAAAGCGGCGGTGGGGAAGATGAGTCTGTATGAGTCGTTTGCTCAGGCCACAGCACTGGGTGACCTGCATACCTGCCTCATGATGGACATGAAAGCCTGCCAGGAGGACGATGTGAGGCTGCTATGTTACCTCACCCCCTCCATCTACTCAGAGTTCCCAGATGAGACCCTGCGGAGTGGGGAACTTCTTAATATGATTGTTGCTGTAATTGATTCCACGcagCTTCAGGAACTGATGTGTCATGTTATGATGGGGAATCTGGTAATGTTCCGCAAAGACTCTGTACTCAACATTCTCATTCAGTCACTGGATTGGGAGACATTTGAGCAGTATAGCACATGGCAGCTGTTCCTAGCCCATAGCATCCCACTGGAAACCATTATACCCATTTTACAGCACCTCAAATACAAAGAGCATCCAGAAGCCCTCTCCTGCTTGCTGCTGCAACTTCGCAGAGAGAGTCCCACTGAAGAAATGGTAAAGATGGTTCTAAGTCGACCGTGTCACCAAGAAGACCAGTTTACCACCAGCATCCTGCGGCATTGGGCAGCCAAACATGATGACCAGCTGGGGGAGCACATAAAGGCCCTGCTAATCAAGAACAACAACATGCCTCGCAAGCGGCAGAGCTTACGGAGCTCCAGCAGCAAATTGGCTCAGCTGACACTAGAGCAGATGCTGGAGCATTTGGACTGTCTGAGACTCAGTCTGAGCAACACCAAGAATAACTtCTTTACCCAGACGCCCATCCTGCAGGCTCTGCAGCATGTCCAGGCCAGCTGTGACGAAGCCCATAAGATGAGGTTCAGCGATCTGTTCTCCTTGGCTGAAGAGTATGAGGACTCCTCAAAGCCTCCAAAATCCAGACGTAAAGCTCCAGCCACTTCCCCCCGATCCAGAAAGGGTGCCGCTCCTCCGGCCAATGAGGATGACAGCGCCTCATCTAGCGCCTCGGAAGAAGAAGACTCTAAACCCAAAGCCCccaaaaggaaaaggaaatgcTCATCTGCAGTGGGCTCCGACAGTGACTGAGAGGAAACCAGCCATCTCTGCAAGCCCCACCCACAGCACCCCCACATTCACGCCATTCTTCTGTCGTGATGTCAATGGAGAATGAACCACCAGCCAATCATCTGCTCCAACCACTCAGGGCATCTTGCCCTTTCATAAAAGGAGGgacgctctctctttctgggaCTCGAATGCCGTTGGCTGGAGCCGGGAGACAAacccttttttttcctctccgcAGCACAAGTCTCATTGGCTGATTTGGGCTTGGGGTAAGGTTGGGTTTGAGGGTCTCTGGGATGTGCTGCACTTCGGAACTGAGACTGGCATGGACTGATAGAACCACAACAATACAGACAGCCCTGCGGAAAGAATCGTACCCAGGAGCTACACTTAATGTTGCTGTACTTATTGATGCCCCTTCTACGATTCAGCACTCTCATGATGTGTGTGAATGGAATAGCAAAAGCCCCCAAATGTAGATAATGAAAGTAAAATCCCTGCTACATGAGGTCGAGCAAAGGGATGATTTTACAGTATTGACCGCGGATGTTGTGTtggaaaaacagcaactttaaaagTACTCCAAGTCCACAAAGacgtattttattatttgatgaTGAACAGTCATTCGCTTTGTCTCTTAGAAATCCCTTTTTGTCCTGATTGGATGTGGTGACCCACTGGAGGTGGGACCTGGGATTTTGCAGGGAGGAAGACACTCCTCAGTgaatttttaccatgtttgcACTGCACACAGATGCAGAAATTGGACTGTATAAATGGAAGACTTCTGACATGTTGACAGACTTTTTAAGAAAATTGCTTTCTACTGACCTATTTTCGTAAAAAAAGATCATAACTATGTTAAAGGATTATGATATTAATAAAAAGGCGGGGAAAAATT

Function

symbol description
ints3 Predicted to be involved in DNA repair; mitotic G2/M transition checkpoint; and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Orthologous to human INTS3 (integrator complex subunit 3).

NR:

description
PREDICTED: integrator complex subunit 3

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component

KEGG:

id description
K13140 INTS3; integrator complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683102.1 True 4203 mRNA 0.50 29 15592443 15611187
XM_022683103.1 False 4172 mRNA 0.50 29 15592444 15611187

Neighbor

gene id symbol gene type direction distance location
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding upstream 9585 15465492 ~ 15582858 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding upstream 157977 15400923 ~ 15434466 (+)
jarid2 jarid2 coding upstream 332779 15077544 ~ 15259664 (+)
sdhaf3 sdhaf3 coding upstream 1227766 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 1253041 14301910 ~ 14339402 (+)
LOC103028143 LOC108273188 coding downstream 3986 15615173 ~ 15632584 (+)
LOC103028648 LOC108435516,LOC108273190 coding downstream 22777 15633964 ~ 15645496 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 55451 15666638 ~ 15695499 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding downstream 88538 15699725 ~ 15709451 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding downstream 125350 15736537 ~ 15747045 (+)
G197747 NA non-coding upstream 198765 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 237206 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 801233 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 806703 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 818981 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 210291 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 534324 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 535298 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 577725 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 615380 16226567 ~ 16228218 (+)
G197665 NA other upstream 795715 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1123561 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1299375 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2229785 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2628094 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 150736 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 710755 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 733930 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 777621 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 813430 16424617 ~ 16430534 (+)

Expression


Co-expression Network