neu1 (neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520)


Basic Information

Item Value
gene id neu1
gene name neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15736537 ~ 15747045 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683104.1
GTGATCACATGATAAAGTTGTGGCGAACAGAAGCAGCGGCAGCGGCCGGGCTGAGCTCGTGTCTCTGTTTGTGTTTGATGGGGTTTTAGAGTCGATGCGGGGTTTGGATCCTGTTAGAGGTGCAGAAGAGCAGAGAGGCTGAAGGCGGGATGGCTCGGCTGTGGCTCGTGGCTGTGCTGGTGTCTGTGGTGTCTGTGCTGAAGGCGAGTGAGGAGCGCTCACAGATCGAGCCACTGGTTTATGATGAGCAGTTGCTGTGGGTGAGCGGTGGAGCAGGTGAAGTTAATACGTACAGAATCCCTCTGCTGTCATTTACATCACAAGGAAGTCTGTTAGCCTTTACTGAGGCAAGAAAACATTCATCAGGGGACATTGGGGCTAAGTTCATTGCAATGAGACGCTCTACAGATAAAGGAGCCACATGGTCTCCCACATTCTTCATAGTGAACGACGGCTCTATGGTGGATGGTTTGAACCTGGGATCAGTCGTGGTCGATGAGCAAACAGGCTCTGTGATTCTGGTCTACTCCCTGTGCTTCCACCAATACCATTGCCACCCTTCCAGCACCATGCTGGTGGAGAGCCTGGATGATGGACTGACATGGAGCGCACCTCGCAACCTCTCTGTCCAGCTTGGGGTGAAGAGCTTTGCCCCAGGACCCGGATTTGGCATTCAGAAACGTTATGATCCATCAGCTGGTCGTCTGGTAGTCTGTGGTCATGGCACTCTCGAGGGTGATGGAGTTTTCTGCATCCTGAGTGATGATCACGGGCGAACGTGGAAAAACGGAGCTGCACTAAAGAGCATCCCCTACAACCAGCCCAAACAGAACCTAGACTTCAACCCAGATGAGTGTCAGCCTGTGGAACTCCAGGATGGAAGTATAGTCATTAACGTGAGAAACCAGAACAACTACCACTGTCACTGCCGGATGGTAGTACGGAGTCTGGACGGGGGTGAGACGCTGCCTGTGGAGGAGCTAAAGTTTGACCACACGCTGGTTGATCCTGTGGTGGCGGCTGGAGCTCTACAGAAAGAGGGagtgctgtacttcagcaaccCAGCCAACTCTCAACACAGGGTCAATATGACTCTCCGTTGGTCTCTAAATGATGGTAAGTCATGGGAAAAGGAGGCACTCCAGATTTGGCAGGGGCCAAGTGGCTATTCTTCAATGACAACGCTCGTCGGTAACTCTGTTGAAGATAAGAAGTTTGTCTTCGTCATCTATGAGAAGGGCCATCGGGAATATATTGAGACtgtttctgttgccaagatccACCTGTATGGTGGcagatagaataaaaaaaaacagacagtctGCTGTGAAAAAGGGAAATATATGTGACTTATTTTAACAATGTTGCATTTCATTAAATATTCGACTATCTGGAAGTCTTTATTTGCATGAAAGTCAAACTGAGCGTGATCACTAACTTCACTTTTAAAACAACACAGAAAATGCAGCTATGCATTTAAGCTCATTAAACATGGATGGCAAAAATAATGAGTGTCAGAAAAAAGCCTGATCGATCGTCTTCCAGTGTTGTCAAATGCTATAGGTAGTGGGCTGCTTCCAGAACAGGCCATTTCCCCTCTTAAGCAAAGCCAATTCATCTCACAAAGTGCCTGGTATTTAGCTTCAAAgctgaaatgtataaaaaggGTTGGAAAATGAGTGAACACTGCTGTCACCTGGGAtctattttgcttttattattagtttgagATTAGTGCTTTGTGGTGTGGTATTTGAATGTATGCTAAGTGATTCTGAGCAATGACTAACATCCAACCAGCTATAACTTATTGTTTCTGGGGAAAAAATGTCTAAGCCACCATGCAGAATTGATTCTTTCAGGAGCTACTTTCACCCTTgtcttctgtctttttttttctttttattgtctgCATTTGCATTTTTCTCTGAACATGTCTCCAGAACTAAAGAAGGAAATAAACCTTCAGTTTGATCAATTAGGCCCTTGAAATATAATATACCCTGGTTTTGTGGTAATGTGTACTGATAAAAGAGTGCTGAGCTggcagtaaaattaaaaaccctAAAAGCCCCCATTTGTTCCATCAGATTGCACTGGTATCAGGAAATGTGCCAAGTGGTGTGAAACCGATATGATTTATTGTTGACTGTAAGCACCTCTCAGGTATTTAATCTGATGtgcttgctgtttttttattgtaatataagaAATCATTAATCAGCTCAGGTACTTTTTTCAAACAGTTTTTTCTTTTGGACATCATAGTTGTTTCTGAATATGGTAAGGATTGATTTGAAGAATGACTGATTAGCTAAGGGAGCCTTAGCCACTATAGTCTTTGCCCTACATCATTGTTTTTAGAATTTCACTTCACTCCTCACATTTTGTTCATGTTGTCCTTTTTGTTTCTAACAGCCTTTTCTTAAAATGATCTGTACTTCTGTGAAGTCAaaatacactgtttttaaatcattgcTCTTGTCTTAAGTATGTGTAAGGCAGTTGGAAATCATGATGTAAACAATGTAGATAAAACATGTCTTTATCACTGTGTCTCTTatgacttgtttttttgtggaagaATTCCATCACATTGAAGGCATGTTGATTGTGCTTTAAAAACAA

Function

symbol description
neu1 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

NR:

description
sialidase-1-like

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683104.1 True 2628 mRNA 0.43 6 15736537 15747045

Neighbor

gene id symbol gene type direction distance location
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding upstream 27086 15699725 ~ 15709451 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 41038 15666638 ~ 15695499 (+)
LOC103028648 LOC108435516,LOC108273190 coding upstream 91041 15633964 ~ 15645496 (+)
LOC103028143 LOC108273188 coding upstream 103953 15615173 ~ 15632584 (+)
ints3 ints3,LOC107754816 coding upstream 125350 15592443 ~ 15611187 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding downstream 1505 15748550 ~ 15752940 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding downstream 45724 15792769 ~ 15800233 (+)
LOC103032568 NA coding downstream 110071 15857116 ~ 15859664 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding downstream 482462 16229507 ~ 16254632 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 852242 16599287 ~ 16633452 (+)
G197747 NA non-coding upstream 342859 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 381300 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 945327 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 950797 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 963075 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 74433 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 398466 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 399440 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 441867 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 479522 16226567 ~ 16228218 (+)
G197665 NA other upstream 939809 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1267655 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1443469 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2373879 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2772188 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 14878 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 574897 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 598072 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 641763 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 677572 16424617 ~ 16430534 (+)

Expression


Co-expression Network