LOC103028648 (LOC108435516,LOC108273190)


Basic Information

Item Value
gene id LOC103028648
gene name LOC108435516,LOC108273190
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15633964 ~ 15645496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683109.1
CCGCCCCCACCGTAGATACATCGGTAGAGCCGGAGTGAGAGGAAAAATAGAGAGTGTATTCCTCCTTTCTTCCTCGTTTGTCTTGTGTATTGTGTCGCGTGTTTGTCTCTGATGGCTAATTCAGTGTCCGGGCTGCTCTCCGGCGCGCTGTTCGTGTGTTTGTGGGGCGGCTCGGTGTCCGCGCGCTCGGATGTTGTCGAATTGACGGACGTGGACTTCGACTATGTGGCCGCCGAGCACGAGACCATGCTAGTAAAGTTTTACGCGCCGTGgTGTGGCCACTGTAAGAAACTTGCTCCTGAGTTTGAAACTGCTGCCAAACGACTAAAAGGAGTAGTAACTTTAGCAAAGGTGGACTGTACGAGTAGCACTGAGGTTTGTGGGAGATTTGGGGTCACAGGATATCCCACGCTTAAAATATTCAGGAATGGGCGAGAGTCCTCATCATACGATGGTCCTCGCTCAGCAGTTGGAATTGTGGATCAAATGAAGAAGCAAGCAGGTCCTGACTCTGTGCCTCTTCACAATGAAAAAGATCTGGAGACCTTTGTCAACCACTATGATGCAAGTGTGGTTGGGGTCTTTGAGAGCAGTGATAGCCCTCAGCTGGTGGAGTTTCTAAAGGGAGCAAATCTGATGAGGGAAAGTTTCCGCTTTGCTCACACCACTGACCTGCAGCTCGGCCTCAAATATAACCTCACCTCTGAGGGCATCCTGCTGTTTAGGCCTCCCCGGCTGGCCAGCAAGTTTGAAGAAAGCGTGGTGTCACACACAGGTCCTTTCTCCGTCACTGCCCTGCGCCGCTTCATCAGAGACAACATTTTTGGAATCTGCCCACATTTGACGAAGGAGAACATAGATCAGTTAAGAAAGAGGGATCTGCTGACAGCATATTATGACCTGGATTACGTACACAACCCCAAAGGCTCTAACTACTGGAGAAACAGGGTGATGAAGGTGGCATCTCAGTACAGCTCTCGAGGCCTGCTGTTCTCCGTAGCTAATCGGAAAGACTTTGAGGATGAGCTGGAAGAAGACTATGGTCTGGGATCTACAGAAGGCAGTGAGGTTCCGTTTGTTACCATCAGGACTCGATTAGGACACAAATACAGCATGCGTGAGGAGTTCACACGAGATGGAAAGTCTTTAGAGAGGTTTTTGGAGGATTATTATGCCAACAGTTTGAAGCGCTATATCAAATCAGAGCCAGTACCAGCGAAGAATAACGGACCAGTCAAGGTGGTTGTTGCAGATACATTTGAGGAGATTGTAAATGATCCAGAGAAAGACGTGCTGATTGAGTTTTATGCTCCATGGTGCGGCCACTGCAAGAAACTAGAACCCAAATACACAGAACTTGGACAGGAGCTTTCCAGTGATCCCAACATTGTGATTGCCAAGATGGATGCCACCGCAAATGATGTTCCAGAAGGTTATGATGTACATGGATTTCCCACAATATACTTTGTTCCTGCTGGAAGGAAAGCTGAACCAAAGAGATATGAGGGAGCCCGTGAAGTGAAAGATTTTCTAAACTTTTTGAAACGAGAAGCTACCAGCTCCTTGGTGCTAAAAGGAGTAAAAGAAGATCTCTAAAATGATAGAAAGGGAATGCTGGGAAATACAGTGTTTGAATAGGAGTTGCTTGTTTGATTCTGCTCAAATACTGACCACTGGGGACTTTTGGACATTTGGACATACATATCACTCCACAAAAAAATGGATCTGCATTACAGAGGCTACAGAGAGGATtcagagagaaacagtgatCTTTTTTATGAATTGGGAATTGCCTGTTTATGCTGTTTATTTCAGAAAGTCATAGAACAACTTATGGGAGAAGTTAATGCAGAAGTGCACCATTCATTATTAACCAGGGCCATAAAAAGAGGTTTaaatttaaactaatttaaatggTATAATTGAGTTTGATATCTGTTCTTGTGGATGAGCTTTGGGGGCCCTGGGGCCTTACACTGTGCACTCCTGTTAAATATACTGATGATCCCTATGCTTATCTCACTGATGCTTTCTCATGCACTCTCACCTTCTCCATGTCACTGTTACTCCTGCCTGACCAGTGGTTATGCTTTAAGGCAGCTCATTTTTTCCATATTgcacatttatttctttatttatttcttaattattaaaCTGGTAACATTTATCACCTCTGCCTGAAACTGTTACTTTACtgccaaacacaaacaaacaactgCTCTTCTTCAGCTGAATGAATGGGAGACTTTATACCGACTGTAAGTATTgggtttaattaataaaaaagcagGATAGAGCTGTTTACTTTTCTACCGCTCCA

Function

NR:

description
PREDICTED: protein disulfide-isomerase A3-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K03672 trxC; thioredoxin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683109.1 True 2320 mRNA 0.45 13 15633964 15645496

Neighbor

gene id symbol gene type direction distance location
LOC103028143 LOC108273188 coding upstream 1380 15615173 ~ 15632584 (+)
ints3 ints3,LOC107754816 coding upstream 22777 15592443 ~ 15611187 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding upstream 51106 15465492 ~ 15582858 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding upstream 199498 15400923 ~ 15434466 (+)
jarid2 jarid2 coding upstream 374300 15077544 ~ 15259664 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 21142 15666638 ~ 15695499 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding downstream 54229 15699725 ~ 15709451 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding downstream 91041 15736537 ~ 15747045 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding downstream 103054 15748550 ~ 15752940 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding downstream 147273 15792769 ~ 15800233 (+)
G197747 NA non-coding upstream 240286 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 278727 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 842754 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 848224 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 860502 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 175982 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 500015 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 500989 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 543416 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 581071 16226567 ~ 16228218 (+)
G197665 NA other upstream 837236 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1165082 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1340896 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2271306 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2669615 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 116427 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 676446 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 699621 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 743312 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 779121 16424617 ~ 16430534 (+)

Expression


Co-expression Network