tinagl1 (tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600)


Basic Information

Item Value
gene id tinagl1
gene name tinagl1,LOC107669690,LOC106570498,LOC107706169,LOC107593537,LOC107731519,LOC107591600
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28130467 ~ 28176690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683242.1
AAAGAGCCtggcagtgagtgtgtgaggcagAGGGCAGAGACTGGCTGAAAGGAAGGGAAACTCACACAGTCCTGTGTCTGCGAGAGTGCTGGGCTGCAGAGTTTAACCTGTGTACGCACTTCACCTTTGGATTAAAACAGAAGGAGGATTTTTTCAGACTGAAATAAGGCGAGAGATGATGAGGCTGATGCTGGCGGTCGGTGCAGTGCTCCTCCTGCTGGTGGAGGGAAGTACGGCGGCAGGAACTCTGCTCCGGAGCAGGAGGGAGCTGGCCAGCCCGCTGCACGTGGGGGGCATCAGGGACCCTTACGGCTCGTACTGCGAGCGGAGAGGAGGCTGCTGCGAGGGCCGGAATGACCAGTGCACCGTGCCTTACCTGGACACCATTTGCTACTGTGACCTCTTCTGCAATCGCACCATTTCTGACTGCTGCCCGGACTTCTGGGGCCACTGTCTGGGAGTGCCCCCTCCGTACACGGGTATTTGTGAAAGAAACGGCCACAGGTTCCATTCAGGGGCGACCTACAAAGAAAACTGCAATTTATGTACATGTGGGCCGAATGGGCAGTGGGATTGTGAGCAGAATGCCTGTTTGATGGAAGCTGACATGATTCATGCAGTGAACAGAGGAAACTATGGCTGGAGAGCATCTAACTACAGTCAGTTTTGGGGGATGACACTGGATGAGGGGTTGCGGTACCGTCTCGGCACTAGGAGGCCTTCTCGAGCCATCATGAGCATGAATGAGATTCAGATGAATATGGATCATAATGAACATCTACCCAGTTACTTTAATGCTGCTGAGAAGTGGCCAGGAAAGATCCATGAGCCTCTTGACCAGGGCAACTGTGCGGCATCATGGGCTTTCTCTACAGCAGCTGTAGCATCAGACCGAATTTCTATTCAATCTATGGGTCACATGACTCCTCAGCTATCGCCCCAGAATCTGATTTCCTGTGACACGCGGAACCAGGGAGGTTGTGCTGGGGGGCGCATTGACGGGGCTTGGTGGTTTCTGAGGAGAAGGGGGGTGGTAACAGAGGAGTGCTATCCGTTCTCTGCACCCCAGCACACCCCCGCTGAGGTGGGCCGCTGTATGATGCAGAGCCGCTCAGTGGGCCGAGGGAAGAGACAGGCCACAGCGCGCTGCCCCAACAGCCACACCTACAACAACGACATCTTCCAGTCCACCCCACCCTACAGACTCTCCACTAACGAGAAGGAGATAATGAAGGAGATCATGGATAATGGGCCTGTGCAAGCCATTCTGGAGGTCCACGAGGACTTCTTCACATACAAGAGTGGAATCTACCGACACACAAACGTCAACTACCACAAAGCGCCGCAGTACCGCAATCACGGGACCCACTCTGTGAGGATCACAGGaTGGGGAGAAGAAAGAGATTACACTGGGAGAACACATAAGTACTGGATCGCTGCCAACTCATGGGGCAAGAACTGGGGAGAGGATGGCTACTTCCGCATCGCAAGAGGAGAAAACGAATGCGAGATCGAGGCCTTCGTGATTGGAGTGTGGGGCAGGGTAACCATGGAGGACATGCACAACCACCATCACGGCAGACGCAAATAGAGAAGCGCAGTAGAGTCTGCCTCTGATCCCTGACCCCTCCTCCCTGTGAGAGCCGTGTACACCTCATTGCCAACAAACACCAAATACTCAGTCAGAAGAGCGGGATGTGGTTTCCATCAAAGCCATTAAATCCAGTATCCAGTGATATTCCTGCAGTATCTGTTTAACTATGTTCAAAATGCCAGTGCCGTTTAAGACTAACCAGCGCAGTCTGCAGAGCTTCTGATGCAAACATGTTACAGCTATCAAAACCAGCTTTGCATCCATTTCTTTTCTATGCTAAAAGAGAAGCAATGCAAAACAGTTTCACATCGCTTTTTATGTACCAAAGGGTAAGCGTCggtttttgttggtggaaacctGTCCCTGAGTGTTCCCCACTGGCCCTCTGCTGGCCACAGAACTCCATTACAAACCACTCAGGTTCCCAGGTTCTCTTCAGTTCAATGACCACAGTTCACCTCACCTAGTCTAAAGTGTCCGTTTTTGATTACAAGAATGGCTctactttttattgtgtttttttttttagttatttcattttatttgattttagatTTGCAGTTCAGAACAGAACAGGATCAGGGGATTAGAACAGAAAACGGATTGGCTGAAAGGAGGTCGTTTTACCCCAATGCAAAACAATAACACCTTTCCTGTGTGTAAACAGTGTACATACATTCCAGCATTGATGCAAAGGTATACACTGGAAAAGGCAGCAAACACGGTGAGGGAGTGGATTAAGAGGTTGAATTTATGACAGattatttattctaaaattcCCTAGAActgtttttacaattaaattctttgtggttgtgtatttttttcctgaaaaaaaatatggttgcattagttttttatatatccATTATAGATCAATTTAGCCCAAAAGCAACAAACCTCTTTTCACCCAAGGAACAGATATGATAATGACTGAGGAATTAATTTAAgacaataattaaaattaaaaacacaagagTATGAGTCGAGCATGGCTGCTTTTCAGTCACAAAAAAGTGCACCTAGAATCCAGATTTTGTACTGAAATTCTGTAGTTTCAAAACAATGCTACAATTTATATGAAACATAGAGTTTCTTTAATTCAGGAACatcataaaatatatgttttatgatCAAGTATGCTTTCTATGTACCATATGGATAAAGGATCTAATATTTTCTTAGTTAAACAAGGCAGTTAATAAAAGTCAATAAAACCCAGTAAAATATGCAAAGTGGGATTTCCTTAGATAGTTTTAGAATACACAACCCCCTCTAATAGTCTTTTATTGTGTAAACTAACAATGTGCGTAATCAATGTcactttacttattttcttGTTACTTTTAACCtctgagtatttaaaaaaaaatctgaaaatataaatgaaatatgagaaaataatatgaaatattttcaAATAGCAATGGTGTAAATGCTACTATGGGTGAAAAGAGAACGTGAGACCACTGAGTATTGGGATTTAGGATTGTAGAAgagtatattatttttattttttacttttaggatGTTTAGagattcttattatttttttagactaCAAGCAGCCCTTCCCTCTGCTGGAAATCATCAAACCATTCCATCAAATGAACTTCAAAATTATGCAGATATTGCACGAGACACTTTTGTTTTTGCCCATCAGGACCCTTCAATTGAGTCAAAATccccaaaacaacaacaaactaataaaatgttttcaccCATATATGGGAAAGAGCTGTGTGGTCAGTTTCACAGCATTATGTTTTACATTAAGCTTGAGTGTCAGCTTTTCACTGTATATTATGCTCAGTCTTCCTTATcgttgttattattatcatcatcaaagAGCACACAGGCCACAGCAGCAGCGGCACAGTTGGATTAGCATAAAGGCTAACTGAAGCGTTTATGTATACAGGGCTTCTCAAAGCAAACACAGCTGCTGACTTTTAATGTGAGGTCATTAGCTGCTGCTGAGTCACTCCCATAATCCACCGCAGGTGGTCACATGATGGCCATTATCTTGAAGTAACCTGTAGGTGCATGTATTCATCACCTGTGATAAATCttgctgttttgtgttttgctaGAGTCTGCTGAGCTACCCTGACAAACCCTCTGCTACTGAAAACATTCCCCTATTTATTACAGATGTATTGTGACCATCATAAACTATGTTACAGACAGAAACTTGACTTTTCCTTTCATGTAGTGACTTAGCTAATTAACTTAGGGGTGGGTGATTCCAGTCCTGGAGGGCCAGACTCTGCTCAGGCACACCTCACTCACCTCACCTGTTAATTGCCAGATTTAGTAGGGGTGCGTCCCAATTTCATATTTTTCtaactataaggcacactgatatgaggcacactatcaatgaatgtctattttctggtctgttttcgtacgtaaagcttagatttccagatttcccaggctgggtgcagcagcattagcattagcagccaaccgctagcgctagtaaatgccgcccgatagCACACAGAGGAACCCTAAGTGCTCCGGTAAACCAGgctttaacactgtaaacacacaggccaCAGTGCGATATATTGACCTCTGATTAAAGAAAGTGCTAGCATTTAATGTGGTTAATGCTAAATCTCCTTTCGTCTtggtataatgctgtacttcagcagagtggttttactgctccttacaacctgactggtaaaattagtaaaaaggattttaagccTTTTAAGGCCTTATGGTGCGAAAAATTATTAATACTGACCAAGTTGAacgaatgtaaaatataaagtatgtgATAAAGCTGAGTATACTCAAATATCCAAGATACAAAATCAGAACTTGATGTCAACTGTTTTTCATTATCCAttgtaacactttacaaatttAGTTGCATTTGCTTACAGAAACATTAATGTCTGTAAAGACTCTGCTACACATTTACCTGTCTAAGCATTATGAGGGTTCTTCCAGAGTTGTTGATTGCCAGCTGAAATATGCACAATAAACaattacattgttgtttttaagaTAAAATGTGTACTTAATATATTAGATAACTCTTGATTAAATGGGAGGAAAATATAAGTCTGCTGTGCTGTCTGAACATTTAAAGAGCCAATAAGCCCTAAgcaatattttttccattaa

Function

symbol description
tinagl1 Predicted to enable cysteine-type peptidase activity and peptidase inhibitor activity. Acts upstream of or within embryonic viscerocranium morphogenesis and sprouting angiogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space and lysosome. Orthologous to human TINAGL1 (tubulointerstitial nephritis antigen like 1).

NR:

description
PREDICTED: tubulointerstitial nephritis antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683242.1 True 4744 mRNA 0.43 12 28130467 28176690

Neighbor

gene id symbol gene type direction distance location
LOC103032937 gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107591599,LOC107696601 coding upstream 33650 28038748 ~ 28096817 (+)
LOC103033782 si:ch211-57n23.4,LOC108424704,LOC108256859,LOC107593575,LOC107731740,LOC107722127 coding upstream 162968 27933378 ~ 27967499 (+)
LOC103030835 NA coding upstream 211241 27906181 ~ 27919226 (+)
LOC103030526 LOC103030526 coding upstream 229160 27896124 ~ 27901307 (+)
ago2 ago2,LOC107722143,LOC107593532 coding upstream 236941 27873876 ~ 27893526 (+)
LOC103025163 NA coding downstream 179850 28356540 ~ 28369342 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding downstream 194526 28371216 ~ 28403881 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding downstream 239826 28416516 ~ 28506486 (+)
jtb jtb coding downstream 331447 28508137 ~ 28513587 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding downstream 407714 28584404 ~ 28592187 (+)
G200334 NA non-coding upstream 27264 28102973 ~ 28103203 (+)
G200333 NA non-coding upstream 33123 28097002 ~ 28097344 (+)
G200332 NA non-coding upstream 49207 28062370 ~ 28081260 (+)
G200327 NA non-coding upstream 98369 28031851 ~ 28032098 (+)
G200317 NA non-coding upstream 126577 28003534 ~ 28003890 (+)
G200349 trioa,LOC107696598,LOC107669652,LOC108426039 non-coding downstream 35162 28211852 ~ 28214348 (+)
G200371 NA non-coding downstream 216429 28393119 ~ 28394226 (+)
G200389 NA non-coding downstream 423667 28600357 ~ 28602142 (+)
G200391 LOC108426151 non-coding downstream 439426 28616116 ~ 28618054 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding downstream 464477 28641167 ~ 28642032 (+)
LOC103032101 NA other upstream 142572 27978282 ~ 27987895 (+)
G200235 NA other upstream 311817 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 390358 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 824881 27304521 ~ 27305586 (+)
G200104 NA other upstream 845900 27284220 ~ 27284567 (+)
G200341 LOC108426039 other downstream 16884 28193574 ~ 28196198 (+)
lypla2 lypla2,lypa2 other downstream 1351373 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 1366058 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2833236 31009926 ~ 31084633 (+)
G201018 NA other downstream 2836021 31012711 ~ 31015045 (+)

Expression


Co-expression Network