LOC103045125


Basic Information

Item Value
gene id LOC103045125
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29511703 ~ 29517460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683299.1
CACAAagtctgtgttcacattacagaaCTGGGGAAGAAAAGAAAGCAGAAAGAGCGAGACTGTTGACCTGCATGCTTCAACTGGTACTTTAAGAGGAAAAGAAACGTACCTGTGACGGCATTAAAAGCTGACAGCTGTAAAGCCCAAGATCCACCGGCACATCCAAACAACACTGACAAGAACCTGTCTACCTTCACCTTTGAGGAAACAGCAAGTGTGCAAAGCAGAAGAGATGGCCTTGGACATTCCTTCCATCACTCCTGAGCTTGACCGGTTGATCAGGCAGCGGGGCAGAGACCTACGCCTGCGGCAGGTTGATAAGCAGCAGGCTGCGAGGCTGGTCAACAAACTGaaaactgacttactgaagttTTTGAAGGACAACCAAGAGCAGCCTTTCTTTAGAGACGTCAGCCCCATCACTACAGGCAGCTATTTTGAATTAGTAAAGATCATTAAACCCAATGAGTTTGACATCATGCTGAAGCTTCAAACCAGCTCACGTCTTACATGGAAGGCACTGGAGAAATACAACGGAGCCTTCTACACAGTTTCCCTCCAACGCCCTGCACGAAGCGAGATACGCCATTTTCTTCTAGAAGATGAGCGTACCATCTCATCCTCCAAAATAATGAAGGAGATGCACAATCTGGTCCAAAGATTCATCAAATCCTATCAAGTGCCTGCTGGTGAAGGTCGCTGGGTGGTGCACAGGAGGCAGATAAATTCACCAGCTGTAACATTGGGGTTAGTGAATGAGGACGATGGAACAGAAATAATGTCTGTAGATATCGTTCCTGCTCTAGAGGTGCCACAAGGTTGGCCAGAGGCTGCACGAGCTGGACCAGATGTGGATAAATGGCTTGGAAAGAACACTCGCCGCAAATTTGTTGCTCAGCCTGTTTATTTTGTCCCAAAGAGACCAAAACAGCGCAACCTCAGTGACGTTGAAAAAGAGAGCTGGAGAATATCTTTCTCTCATATTGAAAAAGAAATGCTCAGGTTTCATGGCAACCGGAGGACATGCTGTGAGAGGAATGAAATTAGATGCTGCCGAAAAGAGTGCTTGCGGCTCCTCAAGTGCCTGTTTGAGGGCCTGAAGGAAAGATACAAACTCGAACATCTTTGCTCCTATCATGGAAAAACTGCCTTCTTCCACAATCTCTCTGTGAGGTGTGAAGACTCGCTGTGGACTCCAGGGCAGCTGTCTCACTGCTTCATGAGACTGTTGTGCGACTTTGAGAATTCTGCAAACAAGGCATTACTTCCTCACTTTTTCGTTCGTAACTACAACCTATTCTCTCCATCCGTCTTTCCCAAGCGCTCCCTCATGGTTTTGACCAGCGCTCTTAAGGAACAAAGGGAGGAAGGTTTTCCTCTTCTGCAGGTACGAAGGCCTCCAGCCATTGGCTATAATCCTGCCCCTCCAGCACAGCCCCAGGAGGTCCCTGAAGAACCCAACACTGTTACCCCCAAAAACGACACTGTGACCTCTCAGCACAGCTCTTTCACCTTCACTTATGTGACTGTTGCTTGCATTATGCTTTTTATGGCTGTAGGATGTGCActttatgtaaaaatatgaaTGTAAAATATGTCTGTAAAATATGCTGATTCTCTGTGtgaatagttattttttatgttattttaactGGTGTTTAATTTGTTGTAGATTTATGAACAATATTACTTCctgatgtgtttaaaatgtcttttcttttctaaatAAAAAGCAAACTAAAATATA
>XM_022683300.1
CACAAagtctgtgttcacattacagaaCTGGGGAAGAAAAGAAAGCAGAAAGAGCGAGACTGTTGACCTGCATGCTTCAACTGGTACTTTAAGAGGAAAAGAAACGTACCTGTGACGGCATTAAAAGCTGACAGCTGTAAAGCCCAAGATCCACCGGCACATCCAAACAACACTGACAAGAACCTGTCTACCTTCACCTTTGAGGAAACAGCAAGTGTGCAAAGAAGAGATGGCCTTGGACATTCCTTCCATCACTCCTGAGCTTGACCGGTTGATCAGGCAGCGGGGCAGAGACCTACGCCTGCGGCAGGTTGATAAGCAGCAGGCTGCGAGGCTGGTCAACAAACTGaaaactgacttactgaagttTTTGAAGGACAACCAAGAGCAGCCTTTCTTTAGAGACGTCAGCCCCATCACTACAGGCAGCTATTTTGAATTAGTAAAGATCATTAAACCCAATGAGTTTGACATCATGCTGAAGCTTCAAACCAGCTCACGTCTTACATGGAAGGCACTGGAGAAATACAACGGAGCCTTCTACACAGTTTCCCTCCAACGCCCTGCACGAAGCGAGATACGCCATTTTCTTCTAGAAGATGAGCGTACCATCTCATCCTCCAAAATAATGAAGGAGATGCACAATCTGGTCCAAAGATTCATCAAATCCTATCAAGTGCCTGCTGGTGAAGGTCGCTGGGTGGTGCACAGGAGGCAGATAAATTCACCAGCTGTAACATTGGGGTTAGTGAATGAGGACGATGGAACAGAAATAATGTCTGTAGATATCGTTCCTGCTCTAGAGGTGCCACAAGGTTGGCCAGAGGCTGCACGAGCTGGACCAGATGTGGATAAATGGCTTGGAAAGAACACTCGCCGCAAATTTGTTGCTCAGCCTGTTTATTTTGTCCCAAAGAGACCAAAACAGCGCAACCTCAGTGACGTTGAAAAAGAGAGCTGGAGAATATCTTTCTCTCATATTGAAAAAGAAATGCTCAGGTTTCATGGCAACCGGAGGACATGCTGTGAGAGGAATGAAATTAGATGCTGCCGAAAAGAGTGCTTGCGGCTCCTCAAGTGCCTGTTTGAGGGCCTGAAGGAAAGATACAAACTCGAACATCTTTGCTCCTATCATGGAAAAACTGCCTTCTTCCACAATCTCTCTGTGAGGTGTGAAGACTCGCTGTGGACTCCAGGGCAGCTGTCTCACTGCTTCATGAGACTGTTGTGCGACTTTGAGAATTCTGCAAACAAGGCATTACTTCCTCACTTTTTCGTTCGTAACTACAACCTATTCTCTCCATCCGTCTTTCCCAAGCGCTCCCTCATGGTTTTGACCAGCGCTCTTAAGGAACAAAGGGAGGAAGGTTTTCCTCTTCTGCAGGTACGAAGGCCTCCAGCCATTGGCTATAATCCTGCCCCTCCAGCACAGCCCCAGGAGGTCCCTGAAGAACCCAACACTGTTACCCCCAAAAACGACACTGTGACCTCTCAGCACAGCTCTTTCACCTTCACTTATGTGACTGTTGCTTGCATTATGCTTTTTATGGCTGTAGGATGTGCActttatgtaaaaatatgaaTGTAAAATATGTCTGTAAAATATGCTGATTCTCTGTGtgaatagttattttttatgttattttaactGGTGTTTAATTTGTTGTAGATTTATGAACAATATTACTTCctgatgtgtttaaaatgtcttttcttttctaaatAAAAAGCAAACTAAAATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683299.1 True 1747 mRNA 0.45 7 29511703 29517460
XM_022683300.1 False 1744 mRNA 0.45 7 29511703 29517460

Neighbor

gene id symbol gene type direction distance location
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding upstream 4350 29500361 ~ 29507353 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding upstream 11600 29496100 ~ 29500103 (+)
LOC103043706 NA coding upstream 27962 29479125 ~ 29483741 (+)
LOC103042153 LOC108426616 coding upstream 33444 29468749 ~ 29478259 (+)
cap1 cap1,LOC107706206,LOC107697048 coding upstream 51072 29449616 ~ 29460631 (+)
rpl11 rpl11 coding downstream 2073 29519533 ~ 29523870 (+)
pithd1 pithd1,LOC107654704 coding downstream 36776 29554236 ~ 29557533 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding downstream 52618 29570078 ~ 29600164 (+)
gatad1 gatad1,LOC102800149 coding downstream 84407 29601867 ~ 29604753 (+)
LOC103021940 LOC108426757 coding downstream 89609 29607069 ~ 29625468 (+)
G200785 NA non-coding upstream 26017 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 44176 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 492606 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 729669 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 773377 28736851 ~ 28738326 (+)
G200799 NA non-coding downstream 75560 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 118661 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 157326 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 356050 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 831905 30349365 ~ 30393273 (+)
G200341 LOC108426039 other upstream 1315505 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1523808 27978282 ~ 27987895 (+)
G200235 NA other upstream 1693053 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1771594 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 2206117 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 10603 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 25288 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1492466 31009926 ~ 31084633 (+)
G201018 NA other downstream 1495251 31012711 ~ 31015045 (+)
G201207 NA other downstream 2424742 31942202 ~ 31987057 (+)

Expression


Co-expression Network