LOC103027444


Basic Information

Item Value
gene id LOC103027444
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34015702 ~ 34024202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683373.1
CCTGACTCAGGTAACTTAGAGCTTGGAGAACAACTATACTGGAGATGAACAACTATAACAGATCAGGCAGATCTTCTAgatcttcatcatcatccaaCCGAACTTAGACCTGCTTATAGCCACCAGAATGAAGGTTTTCCACTGATTGGATGAAGACCTGCATTGTGCATTAGAttagatcagattatcagatcTGATAATCCTAGATCCTAGACTGATGATCCAGGTCCAGACGTCTACAGCTCTGGATCATCAGCTGAGAATCTAAAGATCTGAGGATCTAAGGAATTAAAGATCTTCTCCAGAAGGAGGACATCTCCACCATGTTCGGCCCAGGGcagctcctctcctctctgggCCCCGGCATCCTCCACTCCCCAGCAGCTCACTTCTTCCCAGCGTTTCCCAGCAGACTGGCTCCTCCTCAGCTCCTGATCCCAACTCCACTGCTCAGCTACGAGCTCCTGCGCTCCTACCTGCACCCCGAGCCCTGCAAACAGGCCCTGCTGCTGGCGACACAGGCGGCGGGCATGGTCCACCTCTCTGAGAGCATCGATGAACCGCGGCCAGTGAAGCAGCGGCGGGCCCGGGCCAACTACAGCAGCTGGCagctggaggagctggagaagGCCTTCGAAAGCACACACTACCCCGACGTCTTCATGCGGGAGGCCCTGGCCCTCCGACTGGACCTGATTGAGGCCAGGGTGCAGGTATGGTTCCAGAATCGCAGGGCGAAGATGCGCAGGCAGATGAAGCTGCAGGGCCAGACTGGAGAGCTGTGTTCTGGCAGGGAGGCTGAGTCCAGGCAGCCGGTGTCGTCCAGCAGGGGCCCGGAGAAGGACAGCATCCAGGTTTCATGCTGGGACAGGAAGCAGGAGAAGAGCAGCCCCTCGTGGCCGAAGCCGCCCCCATCCGCCGTGAGCAGCGGCCCCGCGCCCCTGTCCGAGCGCCCCAGCCCGGAGGACTTCCGCTCCTGCAGCATCGCCGAGCTGAGGGCCAAGGCCAGGGACTACGAGGCCGAGATCCACAGCGGCGTGGCCAAGGCCAGCAGGGAGCATCTCACAGCACACACCCCACAGGTGTTCTCCGCGGACACCGACAGCGACTGATGAAGAGCTGCCAGCTGCGGAAATGTCTGAATTCCTCCAATACCCTCTTATTTATTATCACCTCATTATCACATCATGCGGATGTTCACTCACGGGGATTAAATAATGCCAGGGTGAGACTCAAAACAAGAACACACGCCTGTAAATCACCGGCTCTCATTAACTCCCAACATCCCTGATCCAACTGTAGCTACTGACACTTATGATTTTATTACGACTTTCATCAGTAAATGTGGATATTCTCTGTGTTATTCTCTGTGTTATTTTTGTCAGTATTTAATGATAGCGTCTTCCTGTTGTGCTTTAATGATGTTTGACATGTTAGTAAGGTAAAAACCTGAGCTGTCACCAATGATGATCAAAGAGATATACCAATTATATGTGAGcaatcataaaataataacaat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683373.1 True 1519 mRNA 0.53 3 34015702 34024202

Neighbor

gene id symbol gene type direction distance location
ints1 ints1,LOC107703394,LOC107572041 coding upstream 16961 33939434 ~ 33998741 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding upstream 131057 33817531 ~ 33884645 (+)
LOC103025781 fscn1,fscn1a,LOC107581720,LOC107742378,LOC107674660,LOC107720060 coding upstream 667034 33334726 ~ 33348668 (+)
tnrc18 tnrc18 coding upstream 796866 33099446 ~ 33218836 (+)
slc29a4 slc29a4,LOC108430547,LOC107720057,LOC107581724,LOC107737679,LOC107703421 coding upstream 982980 33006117 ~ 33032722 (+)
micall2 micall2,micall2a coding downstream 10298 34034500 ~ 34076513 (+)
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding downstream 182650 34206852 ~ 34244019 (+)
arpc1a arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414 coding downstream 221950 34246152 ~ 34256116 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding downstream 232362 34256564 ~ 34271331 (+)
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding downstream 261885 34286087 ~ 34321859 (+)
G201722 NA non-coding upstream 108224 33816101 ~ 33907478 (+)
G201725 NA non-coding upstream 143165 33871849 ~ 33872537 (+)
G201708 NA non-coding upstream 310822 33704346 ~ 33704880 (+)
G201704 NA non-coding upstream 345411 33670082 ~ 33670291 (+)
G201699 NA non-coding upstream 357111 33658345 ~ 33658591 (+)
G201786 NA non-coding downstream 120 34024322 ~ 34025453 (+)
G201800 NA non-coding downstream 54339 34078541 ~ 34078751 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding downstream 137243 34161445 ~ 34194241 (+)
G201830 NA non-coding downstream 283773 34307975 ~ 34309433 (+)
G201851 NA non-coding downstream 377395 34401597 ~ 34401908 (+)
psmg3 psmg3 other upstream 200716 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 740795 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 1037792 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 1087783 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1727899 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 1081836 35106038 ~ 35124618 (+)
G202336 NA other downstream 2565246 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 2959121 36983323 ~ 36993332 (+)

Expression


Co-expression Network